Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 AC139530.1-201ENST00000575312 1977 ntBASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM40Q6P9F5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.7■□□□□ 0.91
TRIM40Q6P9F5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 MIR939-201ENST00000401314 82 ntBASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 AC091305.1-201ENST00000479476 895 ntBASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 AL031432.3-201ENST00000607698 485 ntBASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 AC080038.3-201ENST00000623346 1952 ntBASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 RASA4CP-201ENST00000424092 1398 ntBASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM40Q6P9F5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 AC079089.2-201ENST00000531211 1277 ntBASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM40Q6P9F5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 OXCT2P1-201ENST00000447263 1535 ntBASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 IGHV3-19-201ENST00000521488 291 ntBASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 AC142381.2-201ENST00000566120 298 ntBASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM40Q6P9F5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 SUDS3P1-201ENST00000505831 966 ntBASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 AL136967.2-201ENST00000623968 743 ntBASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 C11orf96-202ENST00000528572 1834 ntBASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TRIM40Q6P9F5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms