Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.36■□□□□ 0.37
CX3CL1P78423 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CX3CL1P78423 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CX3CL1P78423 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.35■□□□□ 0.37
CX3CL1P78423 AL031602.1-201ENST00000633169 911 ntBASIC17.35■□□□□ 0.37
CX3CL1P78423 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CL1P78423 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CX3CL1P78423 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.34■□□□□ 0.37
CX3CL1P78423 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
CX3CL1P78423 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CL1P78423 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CL1P78423 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CL1P78423 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CL1P78423 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CL1P78423 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
CX3CL1P78423 AC106739.1-201ENST00000617035 715 ntBASIC17.34■□□□□ 0.37
CX3CL1P78423 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CX3CL1P78423 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CX3CL1P78423 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CX3CL1P78423 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CX3CL1P78423 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.33■□□□□ 0.37
CX3CL1P78423 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CX3CL1P78423 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CX3CL1P78423 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 SLC47A1P1-202ENST00000449666 945 ntBASIC17.33■□□□□ 0.36
CX3CL1P78423 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.33■□□□□ 0.36
CX3CL1P78423 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.33■□□□□ 0.36
CX3CL1P78423 AC068587.7-201ENST00000641602 218 ntBASIC17.33■□□□□ 0.36
CX3CL1P78423 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CX3CL1P78423 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CX3CL1P78423 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CX3CL1P78423 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 SLC25A24-204ENST00000569674 2357 ntBASIC17.32■□□□□ 0.36
CX3CL1P78423 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CX3CL1P78423 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CX3CL1P78423 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.32■□□□□ 0.36
CX3CL1P78423 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.32■□□□□ 0.36
CX3CL1P78423 BX842568.3-201ENST00000418104 571 ntBASIC17.32■□□□□ 0.36
CX3CL1P78423 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CX3CL1P78423 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.32■□□□□ 0.36
CX3CL1P78423 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 CA15P2-201ENST00000611168 834 ntBASIC17.32■□□□□ 0.36
CX3CL1P78423 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CX3CL1P78423 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CX3CL1P78423 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CX3CL1P78423 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CX3CL1P78423 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CX3CL1P78423 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.31■□□□□ 0.36
CX3CL1P78423 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.31■□□□□ 0.36
CX3CL1P78423 AL139246.5-201ENST00000606645 996 ntBASIC17.31■□□□□ 0.36
CX3CL1P78423 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.31■□□□□ 0.36
CX3CL1P78423 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
CX3CL1P78423 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CX3CL1P78423 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CX3CL1P78423 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CX3CL1P78423 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CX3CL1P78423 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CX3CL1P78423 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CX3CL1P78423 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CX3CL1P78423 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms