Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SRP54P61011 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.3■■□□□ 1
SRP54P61011 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.3■■□□□ 1
SRP54P61011 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.3■■□□□ 1
SRP54P61011 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SRP54P61011 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 AC009237.3-201ENST00000393279 1427 ntBASIC21.29■■□□□ 1
SRP54P61011 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SRP54P61011 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SRP54P61011 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SRP54P61011 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SRP54P61011 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.29■■□□□ 1
SRP54P61011 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.29■■□□□ 1
SRP54P61011 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.29■■□□□ 1
SRP54P61011 AC079140.4-201ENST00000507448 529 ntBASIC21.29■■□□□ 1
SRP54P61011 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.28■■□□□ 1
SRP54P61011 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.28■■□□□ 1
SRP54P61011 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.28■■□□□ 1
SRP54P61011 AC090192.1-201ENST00000517740 490 ntBASIC21.28■■□□□ 1
SRP54P61011 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.28■■□□□ 1
SRP54P61011 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.28■■□□□ 1
SRP54P61011 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.28■■□□□ 1
SRP54P61011 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.28■■□□□ 1
SRP54P61011 AC005224.4-201ENST00000583262 1652 ntBASIC21.28■■□□□ 1
SRP54P61011 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.28■■□□□ 1
SRP54P61011 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.27■■□□□ 1
SRP54P61011 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.27■■□□□ 1
SRP54P61011 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.27■■□□□ 1
SRP54P61011 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SRP54P61011 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SRP54P61011 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.26■□□□□ 0.99
SRP54P61011 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 AC137761.2-201ENST00000561729 223 ntBASIC21.26■□□□□ 0.99
SRP54P61011 AC145350.3-201ENST00000569033 163 ntBASIC21.26■□□□□ 0.99
SRP54P61011 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.26■□□□□ 0.99
SRP54P61011 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.26■□□□□ 0.99
SRP54P61011 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SRP54P61011 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRP54P61011 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SRP54P61011 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 AC016769.1-201ENST00000409132 1010 ntBASIC21.25■□□□□ 0.99
SRP54P61011 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.25■□□□□ 0.99
SRP54P61011 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.25■□□□□ 0.99
SRP54P61011 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SRP54P61011 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.24■□□□□ 0.99
SRP54P61011 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.24■□□□□ 0.99
SRP54P61011 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.24■□□□□ 0.99
SRP54P61011 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.24■□□□□ 0.99
SRP54P61011 KRT19P1-201ENST00000405746 1186 ntBASIC21.24■□□□□ 0.99
SRP54P61011 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
SRP54P61011 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.24■□□□□ 0.99
SRP54P61011 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.24■□□□□ 0.99
SRP54P61011 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRP54P61011 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.24■□□□□ 0.99
SRP54P61011 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.23■□□□□ 0.99
SRP54P61011 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SRP54P61011 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms