Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
PKNOX1P55347 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PKNOX1P55347 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PKNOX1P55347 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PKNOX1P55347 FAM99A-202ENST00000538190 1989 ntBASIC21.14■□□□□ 0.97
PKNOX1P55347 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.14■□□□□ 0.97
PKNOX1P55347 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.13■□□□□ 0.97
PKNOX1P55347 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PKNOX1P55347 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PKNOX1P55347 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.13■□□□□ 0.97
PKNOX1P55347 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.12■□□□□ 0.97
PKNOX1P55347 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PKNOX1P55347 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PKNOX1P55347 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.11■□□□□ 0.97
PKNOX1P55347 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
PKNOX1P55347 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.11■□□□□ 0.97
PKNOX1P55347 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.11■□□□□ 0.97
PKNOX1P55347 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.11■□□□□ 0.97
PKNOX1P55347 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKNOX1P55347 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKNOX1P55347 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 AC133637.1-201ENST00000624115 1537 ntBASIC21.1■□□□□ 0.97
PKNOX1P55347 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PKNOX1P55347 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKNOX1P55347 AL031602.1-201ENST00000633169 911 ntBASIC21.1■□□□□ 0.97
PKNOX1P55347 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKNOX1P55347 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.1■□□□□ 0.97
PKNOX1P55347 AC010542.4-201ENST00000563151 1910 ntBASIC21.1■□□□□ 0.97
PKNOX1P55347 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PKNOX1P55347 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 AL356740.2-201ENST00000601559 647 ntBASIC21.09■□□□□ 0.97
PKNOX1P55347 AL035685.1-201ENST00000636663 812 ntBASIC21.09■□□□□ 0.97
PKNOX1P55347 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.09■□□□□ 0.97
PKNOX1P55347 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKNOX1P55347 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PKNOX1P55347 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.08■□□□□ 0.97
PKNOX1P55347 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PKNOX1P55347 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKNOX1P55347 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
PKNOX1P55347 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.08■□□□□ 0.97
PKNOX1P55347 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.08■□□□□ 0.97
PKNOX1P55347 AC005229.4-201ENST00000610085 2198 ntBASIC21.08■□□□□ 0.97
PKNOX1P55347 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.08■□□□□ 0.97
PKNOX1P55347 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PKNOX1P55347 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.08■□□□□ 0.96
PKNOX1P55347 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.08■□□□□ 0.96
PKNOX1P55347 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PKNOX1P55347 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.08■□□□□ 0.96
PKNOX1P55347 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKNOX1P55347 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.07■□□□□ 0.96
PKNOX1P55347 AC006455.2-201ENST00000429931 906 ntBASIC21.07■□□□□ 0.96
PKNOX1P55347 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.07■□□□□ 0.96
PKNOX1P55347 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.07■□□□□ 0.96
PKNOX1P55347 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.07■□□□□ 0.96
PKNOX1P55347 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKNOX1P55347 pRNA.6-201ENST00000610482 90 ntBASIC21.07■□□□□ 0.96
PKNOX1P55347 pRNA.5-201ENST00000612139 90 ntBASIC21.07■□□□□ 0.96
PKNOX1P55347 pRNA.11-201ENST00000618423 90 ntBASIC21.07■□□□□ 0.96
PKNOX1P55347 pRNA.13-201ENST00000619112 90 ntBASIC21.07■□□□□ 0.96
PKNOX1P55347 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKNOX1P55347 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.07■□□□□ 0.96
PKNOX1P55347 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.07■□□□□ 0.96
PKNOX1P55347 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PKNOX1P55347 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKNOX1P55347 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PKNOX1P55347 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms