Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
FOXA1P55317 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXA1P55317 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA1P55317 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.95■□□□□ 0.94
FOXA1P55317 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXA1P55317 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.95■□□□□ 0.94
FOXA1P55317 MIR3181-201ENST00000578512 73 ntBASIC20.95■□□□□ 0.94
FOXA1P55317 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.95■□□□□ 0.94
FOXA1P55317 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.95■□□□□ 0.94
FOXA1P55317 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXA1P55317 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
FOXA1P55317 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 AC079089.2-201ENST00000531211 1277 ntBASIC20.94■□□□□ 0.94
FOXA1P55317 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.94■□□□□ 0.94
FOXA1P55317 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA1P55317 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.93■□□□□ 0.94
FOXA1P55317 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXA1P55317 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXA1P55317 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXA1P55317 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.93■□□□□ 0.94
FOXA1P55317 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.93■□□□□ 0.94
FOXA1P55317 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
FOXA1P55317 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA1P55317 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
FOXA1P55317 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
FOXA1P55317 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
FOXA1P55317 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.92■□□□□ 0.94
FOXA1P55317 AL512631.2-201ENST00000604634 923 ntBASIC20.92■□□□□ 0.94
FOXA1P55317 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
FOXA1P55317 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXA1P55317 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
FOXA1P55317 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.91■□□□□ 0.94
FOXA1P55317 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
FOXA1P55317 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.91■□□□□ 0.94
FOXA1P55317 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.91■□□□□ 0.94
FOXA1P55317 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
FOXA1P55317 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
FOXA1P55317 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXA1P55317 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.9■□□□□ 0.94
FOXA1P55317 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
FOXA1P55317 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA1P55317 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA1P55317 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
FOXA1P55317 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.9■□□□□ 0.94
FOXA1P55317 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA1P55317 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA1P55317 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA1P55317 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.9■□□□□ 0.94
FOXA1P55317 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.9■□□□□ 0.94
FOXA1P55317 Z98882.1-201ENST00000622160 2253 ntBASIC20.9■□□□□ 0.94
FOXA1P55317 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
FOXA1P55317 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
FOXA1P55317 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
FOXA1P55317 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
FOXA1P55317 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.89■□□□□ 0.94
FOXA1P55317 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
FOXA1P55317 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
FOXA1P55317 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.89■□□□□ 0.93
FOXA1P55317 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXA1P55317 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
FOXA1P55317 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXA1P55317 AL024507.2-201ENST00000606070 2574 ntBASIC20.89■□□□□ 0.93
FOXA1P55317 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXA1P55317 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXA1P55317 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXA1P55317 AF106564.1-201ENST00000607058 2553 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms