Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CDX1P47902 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.48■□□□□ 0.39
CDX1P47902 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX1P47902 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX1P47902 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDX1P47902 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX1P47902 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX1P47902 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.47■□□□□ 0.39
CDX1P47902 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX1P47902 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CDX1P47902 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.47■□□□□ 0.39
CDX1P47902 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.47■□□□□ 0.39
CDX1P47902 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX1P47902 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX1P47902 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CDX1P47902 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.47■□□□□ 0.39
CDX1P47902 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX1P47902 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX1P47902 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CDX1P47902 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
CDX1P47902 EDA-201ENST00000338901 1233 ntBASIC17.46■□□□□ 0.39
CDX1P47902 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
CDX1P47902 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX1P47902 AC024257.2-201ENST00000549699 147 ntBASIC17.46■□□□□ 0.39
CDX1P47902 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CDX1P47902 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX1P47902 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.46■□□□□ 0.39
CDX1P47902 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CDX1P47902 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX1P47902 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX1P47902 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.45■□□□□ 0.38
CDX1P47902 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CDX1P47902 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX1P47902 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.44■□□□□ 0.38
CDX1P47902 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CDX1P47902 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CDX1P47902 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CDX1P47902 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.44■□□□□ 0.38
CDX1P47902 AC011298.3-201ENST00000615796 283 ntBASIC17.44■□□□□ 0.38
CDX1P47902 AC009086.3-201ENST00000623486 1008 ntBASIC17.44■□□□□ 0.38
CDX1P47902 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDX1P47902 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CDX1P47902 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 SERBP1P1-201ENST00000396021 1160 ntBASIC17.43■□□□□ 0.38
CDX1P47902 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.43■□□□□ 0.38
CDX1P47902 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.43■□□□□ 0.38
CDX1P47902 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.43■□□□□ 0.38
CDX1P47902 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.43■□□□□ 0.38
CDX1P47902 AL355001.2-201ENST00000620617 1191 ntBASIC17.43■□□□□ 0.38
CDX1P47902 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.43■□□□□ 0.38
CDX1P47902 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDX1P47902 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CDX1P47902 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.42■□□□□ 0.38
CDX1P47902 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.42■□□□□ 0.38
CDX1P47902 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.42■□□□□ 0.38
CDX1P47902 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms