Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.94■□□□□ 0.62
COL8A1P27658 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL8A1P27658 AC010536.3-201ENST00000620306 533 ntBASIC18.94■□□□□ 0.62
COL8A1P27658 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL8A1P27658 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL8A1P27658 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.94■□□□□ 0.62
COL8A1P27658 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
COL8A1P27658 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.93■□□□□ 0.62
COL8A1P27658 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.93■□□□□ 0.62
COL8A1P27658 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.93■□□□□ 0.62
COL8A1P27658 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.93■□□□□ 0.62
COL8A1P27658 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.93■□□□□ 0.62
COL8A1P27658 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.93■□□□□ 0.62
COL8A1P27658 AC083880.1-201ENST00000608266 535 ntBASIC18.93■□□□□ 0.62
COL8A1P27658 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.93■□□□□ 0.62
COL8A1P27658 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL8A1P27658 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
COL8A1P27658 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
COL8A1P27658 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL8A1P27658 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.92■□□□□ 0.62
COL8A1P27658 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.92■□□□□ 0.62
COL8A1P27658 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.92■□□□□ 0.62
COL8A1P27658 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.92■□□□□ 0.62
COL8A1P27658 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
COL8A1P27658 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL8A1P27658 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.92■□□□□ 0.62
COL8A1P27658 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.92■□□□□ 0.62
COL8A1P27658 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.92■□□□□ 0.62
COL8A1P27658 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.92■□□□□ 0.62
COL8A1P27658 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL8A1P27658 AC005224.4-201ENST00000583262 1652 ntBASIC18.92■□□□□ 0.62
COL8A1P27658 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL8A1P27658 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL8A1P27658 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL8A1P27658 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL8A1P27658 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.91■□□□□ 0.62
COL8A1P27658 AC008550.1-201ENST00000511500 884 ntBASIC18.91■□□□□ 0.62
COL8A1P27658 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
COL8A1P27658 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.91■□□□□ 0.62
COL8A1P27658 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL8A1P27658 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.91■□□□□ 0.62
COL8A1P27658 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL8A1P27658 AC145676.1-201ENST00000514988 2004 ntBASIC18.91■□□□□ 0.62
COL8A1P27658 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL8A1P27658 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL8A1P27658 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.91■□□□□ 0.62
COL8A1P27658 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL8A1P27658 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.9■□□□□ 0.62
COL8A1P27658 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL8A1P27658 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL8A1P27658 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.9■□□□□ 0.62
COL8A1P27658 FAM210CP-201ENST00000445714 574 ntBASIC18.9■□□□□ 0.62
COL8A1P27658 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL8A1P27658 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.9■□□□□ 0.62
COL8A1P27658 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
COL8A1P27658 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.9■□□□□ 0.62
COL8A1P27658 AC068587.7-201ENST00000641602 218 ntBASIC18.9■□□□□ 0.62
COL8A1P27658 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.9■□□□□ 0.62
COL8A1P27658 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL8A1P27658 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL8A1P27658 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
COL8A1P27658 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL8A1P27658 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL8A1P27658 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL8A1P27658 CYP2T1P-201ENST00000432607 1285 ntBASIC18.89■□□□□ 0.61
COL8A1P27658 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.89■□□□□ 0.61
COL8A1P27658 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.89■□□□□ 0.61
COL8A1P27658 AC093787.1-201ENST00000450396 207 ntBASIC18.89■□□□□ 0.61
COL8A1P27658 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.89■□□□□ 0.61
COL8A1P27658 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.89■□□□□ 0.61
COL8A1P27658 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL8A1P27658 AC020928.2-201ENST00000588717 2197 ntBASIC18.89■□□□□ 0.61
COL8A1P27658 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.88■□□□□ 0.61
COL8A1P27658 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.88■□□□□ 0.61
COL8A1P27658 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL8A1P27658 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.88■□□□□ 0.61
COL8A1P27658 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 AC068338.2-201ENST00000563278 1430 ntBASIC18.88■□□□□ 0.61
COL8A1P27658 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms