Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
UPK3AO75631 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
UPK3AO75631 AF213884.3-201ENST00000563833 479 ntBASIC19.36■□□□□ 0.69
UPK3AO75631 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.36■□□□□ 0.69
UPK3AO75631 AC005837.3-201ENST00000612163 286 ntBASIC19.36■□□□□ 0.69
UPK3AO75631 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
UPK3AO75631 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.36■□□□□ 0.69
UPK3AO75631 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
UPK3AO75631 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
UPK3AO75631 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 AL137060.1-201ENST00000618151 2648 ntBASIC19.35■□□□□ 0.69
UPK3AO75631 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.35■□□□□ 0.69
UPK3AO75631 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.35■□□□□ 0.69
UPK3AO75631 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
UPK3AO75631 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3AO75631 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
UPK3AO75631 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
UPK3AO75631 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.34■□□□□ 0.69
UPK3AO75631 AC099791.1-201ENST00000416440 715 ntBASIC19.34■□□□□ 0.69
UPK3AO75631 SUDS3P1-201ENST00000505831 966 ntBASIC19.34■□□□□ 0.69
UPK3AO75631 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 AL136967.2-201ENST00000623968 743 ntBASIC19.34■□□□□ 0.69
UPK3AO75631 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3AO75631 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
UPK3AO75631 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3AO75631 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3AO75631 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3AO75631 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.33■□□□□ 0.69
UPK3AO75631 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3AO75631 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.33■□□□□ 0.69
UPK3AO75631 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3AO75631 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 MIR939-201ENST00000401314 82 ntBASIC19.33■□□□□ 0.68
UPK3AO75631 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.33■□□□□ 0.68
UPK3AO75631 AC027682.1-201ENST00000562846 899 ntBASIC19.33■□□□□ 0.68
UPK3AO75631 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
UPK3AO75631 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UPK3AO75631 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
UPK3AO75631 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
UPK3AO75631 AC126544.1-201ENST00000580842 1059 ntBASIC19.32■□□□□ 0.68
UPK3AO75631 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
UPK3AO75631 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.32■□□□□ 0.68
UPK3AO75631 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.32■□□□□ 0.68
UPK3AO75631 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.32■□□□□ 0.68
UPK3AO75631 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.32■□□□□ 0.68
UPK3AO75631 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
UPK3AO75631 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UPK3AO75631 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
UPK3AO75631 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3AO75631 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
UPK3AO75631 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3AO75631 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3AO75631 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3AO75631 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK3AO75631 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
UPK3AO75631 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.31■□□□□ 0.68
UPK3AO75631 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK3AO75631 AC142381.2-201ENST00000566120 298 ntBASIC19.31■□□□□ 0.68
UPK3AO75631 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK3AO75631 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.31■□□□□ 0.68
UPK3AO75631 AC068587.7-201ENST00000641602 218 ntBASIC19.31■□□□□ 0.68
UPK3AO75631 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK3AO75631 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK3AO75631 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.3■□□□□ 0.68
UPK3AO75631 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK3AO75631 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
UPK3AO75631 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK3AO75631 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms