Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.35■□□□□ 0.85
LDB3O75112 OR7E47P-201ENST00000546390 1422 ntBASIC20.35■□□□□ 0.85
LDB3O75112 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB3O75112 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
LDB3O75112 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB3O75112 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LDB3O75112 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.34■□□□□ 0.85
LDB3O75112 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB3O75112 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB3O75112 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.34■□□□□ 0.85
LDB3O75112 AC105233.4-201ENST00000642045 216 ntBASIC20.34■□□□□ 0.85
LDB3O75112 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
LDB3O75112 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.34■□□□□ 0.85
LDB3O75112 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB3O75112 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.34■□□□□ 0.85
LDB3O75112 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
LDB3O75112 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.33■□□□□ 0.85
LDB3O75112 SMUG1P1-201ENST00000590640 811 ntBASIC20.33■□□□□ 0.85
LDB3O75112 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.33■□□□□ 0.84
LDB3O75112 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LDB3O75112 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB3O75112 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.33■□□□□ 0.84
LDB3O75112 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
LDB3O75112 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB3O75112 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.33■□□□□ 0.84
LDB3O75112 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LDB3O75112 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB3O75112 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB3O75112 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDB3O75112 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LDB3O75112 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LDB3O75112 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.32■□□□□ 0.84
LDB3O75112 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB3O75112 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB3O75112 ECEL1P1-201ENST00000373592 1742 ntBASIC20.32■□□□□ 0.84
LDB3O75112 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.32■□□□□ 0.84
LDB3O75112 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB3O75112 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LDB3O75112 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LDB3O75112 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LDB3O75112 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LDB3O75112 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB3O75112 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.31■□□□□ 0.84
LDB3O75112 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB3O75112 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB3O75112 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.31■□□□□ 0.84
LDB3O75112 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB3O75112 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB3O75112 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB3O75112 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.3■□□□□ 0.84
LDB3O75112 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.3■□□□□ 0.84
LDB3O75112 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.3■□□□□ 0.84
LDB3O75112 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.3■□□□□ 0.84
LDB3O75112 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.3■□□□□ 0.84
LDB3O75112 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.3■□□□□ 0.84
LDB3O75112 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
LDB3O75112 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.3■□□□□ 0.84
LDB3O75112 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDB3O75112 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
LDB3O75112 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.29■□□□□ 0.84
LDB3O75112 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.29■□□□□ 0.84
LDB3O75112 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.29■□□□□ 0.84
LDB3O75112 AC012414.1-201ENST00000556676 535 ntBASIC20.29■□□□□ 0.84
LDB3O75112 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms