Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
TRIM38O00635 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.7■■□□□ 1.06
TRIM38O00635 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM38O00635 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.7■■□□□ 1.06
TRIM38O00635 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TRIM38O00635 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM38O00635 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM38O00635 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
TRIM38O00635 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM38O00635 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM38O00635 AC004911.1-201ENST00000416316 871 ntBASIC21.69■■□□□ 1.06
TRIM38O00635 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 KRT18P14-201ENST00000534205 1250 ntBASIC21.69■■□□□ 1.06
TRIM38O00635 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 NTF6G-201ENST00000591094 616 ntBASIC21.69■■□□□ 1.06
TRIM38O00635 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.69■■□□□ 1.06
TRIM38O00635 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM38O00635 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
TRIM38O00635 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM38O00635 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.68■■□□□ 1.06
TRIM38O00635 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM38O00635 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM38O00635 TERF1P2-201ENST00000583350 1212 ntBASIC21.68■■□□□ 1.06
TRIM38O00635 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TRIM38O00635 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM38O00635 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TRIM38O00635 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
TRIM38O00635 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM38O00635 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM38O00635 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM38O00635 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.67■■□□□ 1.06
TRIM38O00635 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
TRIM38O00635 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 LINC02228-203ENST00000641970 1355 ntBASIC21.67■■□□□ 1.06
TRIM38O00635 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.67■■□□□ 1.06
TRIM38O00635 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
TRIM38O00635 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM38O00635 LINC01529-204ENST00000636474 1715 ntBASIC21.66■■□□□ 1.06
TRIM38O00635 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TRIM38O00635 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRIM38O00635 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM38O00635 AP005435.1-201ENST00000529293 1178 ntBASIC21.66■■□□□ 1.06
TRIM38O00635 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
TRIM38O00635 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM38O00635 AC144652.1-201ENST00000609974 1624 ntBASIC21.66■■□□□ 1.06
TRIM38O00635 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRIM38O00635 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.65■■□□□ 1.06
TRIM38O00635 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TRIM38O00635 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM38O00635 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM38O00635 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM38O00635 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.64■■□□□ 1.06
TRIM38O00635 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms