Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
CACNA1AO00555 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1AO00555 AC233702.5-201ENST00000584107 538 ntBASIC20.79■□□□□ 0.92
CACNA1AO00555 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.79■□□□□ 0.92
CACNA1AO00555 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CACNA1AO00555 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1AO00555 ERN1-208ENST00000606895 2068 ntBASIC20.79■□□□□ 0.92
CACNA1AO00555 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.78■□□□□ 0.92
CACNA1AO00555 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.78■□□□□ 0.92
CACNA1AO00555 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.78■□□□□ 0.92
CACNA1AO00555 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CACNA1AO00555 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1AO00555 AL121894.2-201ENST00000602977 491 ntBASIC20.77■□□□□ 0.92
CACNA1AO00555 AL161729.1-201ENST00000604104 1402 ntBASIC20.77■□□□□ 0.92
CACNA1AO00555 ALDH1A3-203ENST00000557963 1670 ntBASIC20.77■□□□□ 0.92
CACNA1AO00555 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1AO00555 TERF1P5-201ENST00000477545 1207 ntBASIC20.77■□□□□ 0.92
CACNA1AO00555 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.77■□□□□ 0.92
CACNA1AO00555 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.77■□□□□ 0.92
CACNA1AO00555 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1AO00555 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1AO00555 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.77■□□□□ 0.91
CACNA1AO00555 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.77■□□□□ 0.91
CACNA1AO00555 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1AO00555 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1AO00555 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1AO00555 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1AO00555 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.76■□□□□ 0.91
CACNA1AO00555 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1AO00555 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CACNA1AO00555 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.76■□□□□ 0.91
CACNA1AO00555 AL049597.2-201ENST00000565575 961 ntBASIC20.76■□□□□ 0.91
CACNA1AO00555 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CACNA1AO00555 AL590326.2-201ENST00000625139 305 ntBASIC20.76■□□□□ 0.91
CACNA1AO00555 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1AO00555 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.75■□□□□ 0.91
CACNA1AO00555 MIR6089-201ENST00000616698 64 ntBASIC20.75■□□□□ 0.91
CACNA1AO00555 KRT17P2-201ENST00000300992 1314 ntBASIC20.75■□□□□ 0.91
CACNA1AO00555 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.75■□□□□ 0.91
CACNA1AO00555 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 KRT18P20-201ENST00000548986 1279 ntBASIC20.75■□□□□ 0.91
CACNA1AO00555 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1AO00555 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
CACNA1AO00555 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1AO00555 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.74■□□□□ 0.91
CACNA1AO00555 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1AO00555 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1AO00555 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1AO00555 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1AO00555 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1AO00555 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1AO00555 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1AO00555 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.74■□□□□ 0.91
CACNA1AO00555 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.74■□□□□ 0.91
CACNA1AO00555 AC069236.1-201ENST00000604339 616 ntBASIC20.74■□□□□ 0.91
CACNA1AO00555 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1AO00555 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CACNA1AO00555 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CACNA1AO00555 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.73■□□□□ 0.91
CACNA1AO00555 AL049637.2-201ENST00000641778 930 ntBASIC20.73■□□□□ 0.91
CACNA1AO00555 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CACNA1AO00555 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.73■□□□□ 0.91
CACNA1AO00555 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CACNA1AO00555 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.73■□□□□ 0.91
CACNA1AO00555 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CACNA1AO00555 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
CACNA1AO00555 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.72■□□□□ 0.91
CACNA1AO00555 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.72■□□□□ 0.91
CACNA1AO00555 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.72■□□□□ 0.91
CACNA1AO00555 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CACNA1AO00555 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.72■□□□□ 0.91
CACNA1AO00555 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.72■□□□□ 0.91
CACNA1AO00555 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms