Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SLC28A1O00337 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SLC28A1O00337 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SLC28A1O00337 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.79■□□□□ 0.92
SLC28A1O00337 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.79■□□□□ 0.92
SLC28A1O00337 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.79■□□□□ 0.92
SLC28A1O00337 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SLC28A1O00337 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SLC28A1O00337 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC28A1O00337 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC28A1O00337 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC28A1O00337 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SLC28A1O00337 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.79■□□□□ 0.92
SLC28A1O00337 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.79■□□□□ 0.92
SLC28A1O00337 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SLC28A1O00337 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.79■□□□□ 0.92
SLC28A1O00337 OR7E47P-201ENST00000546390 1422 ntBASIC20.78■□□□□ 0.92
SLC28A1O00337 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 AC026310.3-201ENST00000625186 2373 ntBASIC20.78■□□□□ 0.92
SLC28A1O00337 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SLC28A1O00337 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC28A1O00337 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SLC28A1O00337 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.78■□□□□ 0.92
SLC28A1O00337 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
SLC28A1O00337 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.78■□□□□ 0.92
SLC28A1O00337 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 AC087239.1-201ENST00000622671 572 ntBASIC20.78■□□□□ 0.92
SLC28A1O00337 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC28A1O00337 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC28A1O00337 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC28A1O00337 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SLC28A1O00337 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC28A1O00337 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC28A1O00337 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SLC28A1O00337 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.77■□□□□ 0.92
SLC28A1O00337 AL137060.1-201ENST00000618151 2648 ntBASIC20.77■□□□□ 0.92
SLC28A1O00337 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SLC28A1O00337 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC28A1O00337 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC28A1O00337 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC28A1O00337 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC28A1O00337 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.76■□□□□ 0.91
SLC28A1O00337 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.76■□□□□ 0.91
SLC28A1O00337 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC28A1O00337 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC28A1O00337 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.76■□□□□ 0.91
SLC28A1O00337 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SLC28A1O00337 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC28A1O00337 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.75■□□□□ 0.91
SLC28A1O00337 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC28A1O00337 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC28A1O00337 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SLC28A1O00337 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SLC28A1O00337 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.74■□□□□ 0.91
SLC28A1O00337 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SLC28A1O00337 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.74■□□□□ 0.91
SLC28A1O00337 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.74■□□□□ 0.91
SLC28A1O00337 AL512631.2-201ENST00000604634 923 ntBASIC20.74■□□□□ 0.91
SLC28A1O00337 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SLC28A1O00337 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.74■□□□□ 0.91
SLC28A1O00337 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SLC28A1O00337 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.74■□□□□ 0.91
SLC28A1O00337 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms