Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC241377.3-202ENST00000626088 1088 ntBASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC241585.3-202ENST00000628937 1088 ntBASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC245100.8-202ENST00000629247 1058 ntBASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AC137767.1-201ENST00000602918 1920 ntBASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SYT6-210ENST00000641643 1587 ntBASIC29.07■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC29.06■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AC007375.3-201ENST00000600936 2314 ntBASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 ECEL1P1-201ENST00000373592 1742 ntBASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 HES6-206ENST00000409574 738 ntTSL 2 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC29.02■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
SENP3-EIF4A1A0A087X0R7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC091305.1-201ENST00000479476 895 ntBASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AP001330.3-201ENST00000520123 633 ntBASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC127496.7-201ENST00000625110 1798 ntBASIC29.01■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC29■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC242852.2-201ENST00000615738 1807 ntBASIC28.99■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms