Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 LINC01287-203ENST00000454441 1007 ntTSL 5 BASIC13.1□□□□□ -0.314e-7■■■■■ 40.6
SF3B1O75533 CEPT1-209ENST00000498239 1957 ntTSL 1 (best)12.16□□□□□ -0.462e-6■■■■■ 40.6
SF3B1O75533 CEPT1-201ENST00000357172 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.52e-6■■■■■ 40.6
SF3B1O75533 CEPT1-210ENST00000545121 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.582e-6■■■■■ 40.6
SF3B1O75533 TXNRD1-215ENST00000526950 1847 ntTSL 5 BASIC11.33□□□□□ -0.594e-7■■■■■ 40.6
SF3B1O75533 TXNRD1-207ENST00000525265 572 ntTSL 210.92□□□□□ -0.664e-7■■■■■ 40.6
SF3B1O75533 CEPT1-206ENST00000478042 2175 ntTSL 56.08□□□□□ -1.442e-6■■■■■ 40.6
SF3B1O75533 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.68□□□□□ -1.52e-6■■■■■ 40.6
SF3B1O75533 IGF2BP3-202ENST00000421467 2988 ntTSL 510.29□□□□□ -0.763e-6■■■■■ 40.6
SF3B1O75533 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.33e-6■■■■■ 40.6
SF3B1O75533 ZFPM2-204ENST00000518180 596 ntTSL 43.23□□□□□ -1.892e-6■■■■■ 40.6
SF3B1O75533 SF3B1-203ENST00000414174 593 ntTSL 43.44□□□□□ -1.866e-7■■■■■ 40.6
SF3B1O75533 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.181e-6■■■■■ 40.5
SF3B1O75533 CLK1-207ENST00000461981 3173 ntTSL 25.95□□□□□ -1.461e-6■■■■■ 40.5
SF3B1O75533 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.4■□□□□ 0.383e-6■■■■■ 40.5
SF3B1O75533 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.83□□□□□ -0.043e-6■■■■■ 40.5
SF3B1O75533 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.573e-6■■■■■ 40.5
SF3B1O75533 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.633e-6■■■■■ 40.5
SF3B1O75533 MARK3-226ENST00000561314 724 ntTSL 311.71□□□□□ -0.535e-6■■■■■ 40.5
SF3B1O75533 MARK3-211ENST00000556744 1051 ntTSL 1 (best)10.34□□□□□ -0.755e-6■■■■■ 40.5
SF3B1O75533 MARK3-208ENST00000554627 1571 ntTSL 210.32□□□□□ -0.765e-6■■■■■ 40.5
SF3B1O75533 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.6■□□□□ 0.572e-6■■■■■ 40.4
SF3B1O75533 KMT2E-209ENST00000478990 1500 ntTSL 517.92■□□□□ 0.462e-6■■■■■ 40.4
SF3B1O75533 RCL1-209ENST00000473230 441 ntTSL 37.4□□□□□ -1.224e-6■■■■■ 40.4
SF3B1O75533 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.344e-7■■■■■ 40.4
SF3B1O75533 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.18■□□□□ 0.344e-7■■■■■ 40.4
SF3B1O75533 FTH1-206ENST00000530019 550 ntTSL 417.18■□□□□ 0.344e-7■■■■■ 40.4
SF3B1O75533 FTH1-211ENST00000534719 788 ntTSL 1 (best)15.1■□□□□ 0.014e-7■■■■■ 40.4
SF3B1O75533 FTH1-210ENST00000534180 983 ntTSL 214.8□□□□□ -0.044e-7■■■■■ 40.4
SF3B1O75533 FTH1-205ENST00000529631 507 ntTSL 4 BASIC13.87□□□□□ -0.194e-7■■■■■ 40.4
SF3B1O75533 FTH1-208ENST00000532829 912 ntTSL 213.61□□□□□ -0.234e-7■■■■■ 40.4
SF3B1O75533 FTH1-209ENST00000533138 885 ntTSL 512.46□□□□□ -0.414e-7■■■■■ 40.4
SF3B1O75533 FTH1-203ENST00000529191 530 ntTSL 2 BASIC12.32□□□□□ -0.444e-7■■■■■ 40.4
SF3B1O75533 FTH1-212ENST00000620041 825 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.914e-7■■■■■ 40.4
SF3B1O75533 FTH1-207ENST00000532601 742 ntTSL 3 BASIC8.79□□□□□ -14e-7■■■■■ 40.4
SF3B1O75533 IDH1-202ENST00000415282 942 ntTSL 219.3■□□□□ 0.687e-7■■■■■ 40.4
SF3B1O75533 STK11-203ENST00000585748 746 ntTSL 314.62□□□□□ -0.074e-6■■■■■ 40.4
SF3B1O75533 IDH1-207ENST00000462386 1614 ntTSL 213.73□□□□□ -0.217e-7■■■■■ 40.4
SF3B1O75533 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 516.86■□□□□ 0.292e-6■■■■■ 40.3
SF3B1O75533 AC084337.2-202ENST00000640959 595 ntAPPRIS P5 TSL 4 BASIC12.56□□□□□ -0.41e-6■■■■■ 40.3
SF3B1O75533 AC084337.2-201ENST00000639224 589 ntAPPRIS ALT2 TSL 411.79□□□□□ -0.521e-6■■■■■ 40.3
SF3B1O75533 NAP1L4-220ENST00000532325 526 ntTSL 56.07□□□□□ -1.442e-6■■■■■ 40.3
SF3B1O75533 NAP1L4-204ENST00000448187 888 ntTSL 54.25□□□□□ -1.732e-6■■■■■ 40.3
SF3B1O75533 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC11.25□□□□□ -0.613e-6■■■■■ 40.3
SF3B1O75533 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.032e-6■■■■■ 40.3
SF3B1O75533 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.162e-6■■■■■ 40.3
SF3B1O75533 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.83■■■□□ 2.213e-7■■■■■ 40.2
SF3B1O75533 TRIR-204ENST00000591254 988 ntTSL 228.25■■■□□ 2.112e-8■■■■■ 40.2
SF3B1O75533 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.59■■■□□ 2.013e-7■■■■■ 40.2
SF3B1O75533 VASP-208ENST00000589627 696 ntTSL 326.08■■□□□ 1.772e-8■■■■■ 40.2
SF3B1O75533 UBALD1-204ENST00000588691 281 ntTSL 325.98■■□□□ 1.753e-7■■■■■ 40.2
SF3B1O75533 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.98■■□□□ 1.752e-8■■■■■ 40.2
SF3B1O75533 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.54■■□□□ 1.683e-7■■■■■ 40.2
SF3B1O75533 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.1■■□□□ 1.612e-8■■■■■ 40.2
SF3B1O75533 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.592e-8■■■■■ 40.2
SF3B1O75533 VASP-211ENST00000592139 424 ntTSL 324.89■■□□□ 1.582e-8■■■■■ 40.2
SF3B1O75533 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.573e-7■■■■■ 40.2
SF3B1O75533 UBALD1-207ENST00000591113 659 ntTSL 524.67■■□□□ 1.543e-7■■■■■ 40.2
SF3B1O75533 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.462e-8■■■■■ 40.2
SF3B1O75533 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.69■■□□□ 1.383e-7■■■■■ 40.2
SF3B1O75533 VASP-210ENST00000590603 388 ntTSL 222.59■■□□□ 1.212e-8■■■■■ 40.2
SF3B1O75533 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.64■■□□□ 1.053e-7■■■■■ 40.2
SF3B1O75533 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.032e-8■■■■■ 40.2
SF3B1O75533 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.17■□□□□ 0.982e-8■■■■■ 40.2
SF3B1O75533 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.17■□□□□ 0.982e-8■■■■■ 40.2
SF3B1O75533 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.03■□□□□ 0.962e-8■■■■■ 40.2
SF3B1O75533 VASP-202ENST00000586014 1725 ntTSL 520.82■□□□□ 0.922e-8■■■■■ 40.2
SF3B1O75533 VASP-203ENST00000586619 655 ntTSL 220.81■□□□□ 0.922e-8■■■■■ 40.2
SF3B1O75533 TAF15-209ENST00000604434 2103 nt20.46■□□□□ 0.872e-8■■■■■ 40.2
SF3B1O75533 MECP2-216ENST00000627864 581 ntTSL 320.27■□□□□ 0.842e-8■■■■■ 40.2
SF3B1O75533 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.82e-6■■■■■ 40.2
SF3B1O75533 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.762e-8■■■■■ 40.2
SF3B1O75533 ATF5-203ENST00000596658 722 ntTSL 219.77■□□□□ 0.762e-8■■■■■ 40.2
SF3B1O75533 SPACA6-207ENST00000573266 1960 ntTSL 219.33■□□□□ 0.692e-6■■■■■ 40.2
SF3B1O75533 MECP2-218ENST00000629277 2558 nt19.28■□□□□ 0.682e-8■■■■■ 40.2
SF3B1O75533 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.662e-8■■■■■ 40.2
SF3B1O75533 TAF15-204ENST00000603427 547 ntTSL 418.3■□□□□ 0.522e-8■■■■■ 40.2
SF3B1O75533 TAF15-208ENST00000604360 409 ntTSL 318.3■□□□□ 0.522e-8■■■■■ 40.2
SF3B1O75533 TAF15-214ENST00000605649 776 ntTSL 518.3■□□□□ 0.522e-8■■■■■ 40.2
SF3B1O75533 ATF5-204ENST00000597227 828 ntTSL 318.14■□□□□ 0.492e-8■■■■■ 40.2
SF3B1O75533 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.332e-8■■■■■ 40.2
SF3B1O75533 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.7■□□□□ 0.262e-8■■■■■ 40.2
SF3B1O75533 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.262e-8■■■■■ 40.2
SF3B1O75533 NFIC-205ENST00000588839 625 ntTSL 316.26■□□□□ 0.192e-8■■■■■ 40.2
SF3B1O75533 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.19■□□□□ 0.183e-9■■■■■ 40.2
SF3B1O75533 YIF1B-209ENST00000588002 575 ntTSL 516.07■□□□□ 0.162e-7■■■■■ 40.2
SF3B1O75533 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.113e-9■■■■■ 40.2
SF3B1O75533 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.67■□□□□ 0.13e-9■■■■■ 40.2
SF3B1O75533 NAT9-215ENST00000581762 744 ntTSL 215.63■□□□□ 0.093e-9■■■■■ 40.2
SF3B1O75533 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.57■□□□□ 0.083e-9■■■■■ 40.2
SF3B1O75533 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.49■□□□□ 0.073e-9■■■■■ 40.2
SF3B1O75533 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.48■□□□□ 0.072e-8■■■■■ 40.2
SF3B1O75533 MDM2-219ENST00000493419 577 ntTSL 215.42■□□□□ 0.062e-8■■■■■ 40.2
SF3B1O75533 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.21■□□□□ 0.032e-8■■■■■ 40.2
SF3B1O75533 DEDD-205ENST00000464113 964 ntTSL 315.01□□□□□ -0.012e-8■■■■■ 40.2
SF3B1O75533 NAT9-227ENST00000584022 1103 ntTSL 215.01□□□□□ -0.013e-9■■■■■ 40.2
SF3B1O75533 SPACA6-210ENST00000576093 1894 ntTSL 1 (best)14.85□□□□□ -0.032e-6■■■■■ 40.2
SF3B1O75533 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.042e-8■■■■■ 40.2
SF3B1O75533 EEF2-204ENST00000598182 581 ntTSL 214.82□□□□□ -0.044e-6■■■■■ 40.2
SF3B1O75533 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.062e-8■■■■■ 40.2
Retrieved 100 of 46,956 protein–RNA pairs in 3379.3 ms