Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4AQ9UN37 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4AQ9UN37 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4AQ9UN37 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 SERBP1P1-201ENST00000396021 1160 ntBASIC20.85■□□□□ 0.93
VPS4AQ9UN37 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
VPS4AQ9UN37 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC087742.1-201ENST00000575880 1738 ntBASIC20.84■□□□□ 0.93
VPS4AQ9UN37 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC092053.2-201ENST00000640557 1818 ntBASIC20.84■□□□□ 0.93
VPS4AQ9UN37 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC099791.1-201ENST00000416440 715 ntBASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC009086.3-201ENST00000623486 1008 ntBASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 AC139530.1-201ENST00000575312 1977 ntBASIC20.84■□□□□ 0.93
VPS4AQ9UN37 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4AQ9UN37 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 AL138724.1-201ENST00000606771 1088 ntBASIC20.83■□□□□ 0.93
VPS4AQ9UN37 AC011298.3-201ENST00000615796 283 ntBASIC20.83■□□□□ 0.93
VPS4AQ9UN37 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4AQ9UN37 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4AQ9UN37 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 AC137767.1-201ENST00000602918 1920 ntBASIC20.82■□□□□ 0.92
VPS4AQ9UN37 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.82■□□□□ 0.92
VPS4AQ9UN37 AC034268.1-201ENST00000441047 882 ntBASIC20.82■□□□□ 0.92
VPS4AQ9UN37 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 DUX4L4-201ENST00000566884 1269 ntBASIC20.82■□□□□ 0.92
VPS4AQ9UN37 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4AQ9UN37 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 AC080038.3-201ENST00000623346 1952 ntBASIC20.81■□□□□ 0.92
VPS4AQ9UN37 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.81■□□□□ 0.92
VPS4AQ9UN37 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4AQ9UN37 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms