Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TIMP4Q99727 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TIMP4Q99727 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 AC097381.1-201ENST00000429019 1296 ntBASIC19.9■□□□□ 0.78
TIMP4Q99727 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.9■□□□□ 0.78
TIMP4Q99727 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.9■□□□□ 0.78
TIMP4Q99727 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TIMP4Q99727 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TIMP4Q99727 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 AC139530.1-201ENST00000575312 1977 ntBASIC19.9■□□□□ 0.78
TIMP4Q99727 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TIMP4Q99727 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TIMP4Q99727 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TIMP4Q99727 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.89■□□□□ 0.77
TIMP4Q99727 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TIMP4Q99727 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TIMP4Q99727 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.89■□□□□ 0.77
TIMP4Q99727 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TIMP4Q99727 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.89■□□□□ 0.77
TIMP4Q99727 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TIMP4Q99727 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.89■□□□□ 0.77
TIMP4Q99727 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
TIMP4Q99727 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.89■□□□□ 0.77
TIMP4Q99727 MIR5787-201ENST00000611784 55 ntBASIC19.89■□□□□ 0.77
TIMP4Q99727 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TIMP4Q99727 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TIMP4Q99727 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.88■□□□□ 0.77
TIMP4Q99727 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.88■□□□□ 0.77
TIMP4Q99727 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.88■□□□□ 0.77
TIMP4Q99727 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.88■□□□□ 0.77
TIMP4Q99727 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.88■□□□□ 0.77
TIMP4Q99727 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.88■□□□□ 0.77
TIMP4Q99727 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TIMP4Q99727 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TIMP4Q99727 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.87■□□□□ 0.77
TIMP4Q99727 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 AP005435.1-201ENST00000529293 1178 ntBASIC19.87■□□□□ 0.77
TIMP4Q99727 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.87■□□□□ 0.77
TIMP4Q99727 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TIMP4Q99727 AC004687.1-201ENST00000579003 1625 ntBASIC19.87■□□□□ 0.77
TIMP4Q99727 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
TIMP4Q99727 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TIMP4Q99727 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.86■□□□□ 0.77
TIMP4Q99727 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.86■□□□□ 0.77
TIMP4Q99727 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.86■□□□□ 0.77
TIMP4Q99727 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
TIMP4Q99727 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
TIMP4Q99727 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 MIR572-201ENST00000384983 95 ntBASIC19.86■□□□□ 0.77
TIMP4Q99727 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.86■□□□□ 0.77
TIMP4Q99727 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.86■□□□□ 0.77
TIMP4Q99727 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.86■□□□□ 0.77
TIMP4Q99727 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TIMP4Q99727 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.86■□□□□ 0.77
TIMP4Q99727 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.85■□□□□ 0.77
TIMP4Q99727 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TIMP4Q99727 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TIMP4Q99727 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TIMP4Q99727 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TIMP4Q99727 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TIMP4Q99727 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.85■□□□□ 0.77
TIMP4Q99727 AC087623.3-201ENST00000607047 1098 ntBASIC19.85■□□□□ 0.77
TIMP4Q99727 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.85■□□□□ 0.77
TIMP4Q99727 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TIMP4Q99727 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TIMP4Q99727 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms