Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 AC012414.1-201ENST00000556676 535 ntBASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 AL354811.1-201ENST00000610286 706 ntBASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD1Q96NR3 AC087742.1-201ENST00000575880 1738 ntBASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD1Q96NR3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 MIR6084-201ENST00000622012 110 ntBASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 AC233723.2-201ENST00000623798 2106 ntBASIC20.4■□□□□ 0.86
PTCHD1Q96NR3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.39■□□□□ 0.86
PTCHD1Q96NR3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 AC079089.2-201ENST00000531211 1277 ntBASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.39■□□□□ 0.85
PTCHD1Q96NR3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PTCHD1Q96NR3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 RARRES2P6-201ENST00000567333 442 ntBASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 SMUG1P1-201ENST00000590640 811 ntBASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD1Q96NR3 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PTCHD1Q96NR3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms