Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC007322.4-201ENST00000509611 723 ntBASIC22.5■■□□□ 1.19
TTC28Q96AY4 RPPH1-201ENST00000516869 333 ntBASIC22.5■■□□□ 1.19
TTC28Q96AY4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 AC133561.5-201ENST00000635547 218 ntBASIC22.5■■□□□ 1.19
TTC28Q96AY4 SLC6A10P-202ENST00000431994 2058 ntBASIC22.49■■□□□ 1.19
TTC28Q96AY4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.49■■□□□ 1.19
TTC28Q96AY4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.49■■□□□ 1.19
TTC28Q96AY4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.49■■□□□ 1.19
TTC28Q96AY4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC22.49■■□□□ 1.19
TTC28Q96AY4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TTC28Q96AY4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.48■■□□□ 1.19
TTC28Q96AY4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.48■■□□□ 1.19
TTC28Q96AY4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TTC28Q96AY4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TTC28Q96AY4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
TTC28Q96AY4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.48■■□□□ 1.19
TTC28Q96AY4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
TTC28Q96AY4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TTC28Q96AY4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 AC093787.1-201ENST00000450396 207 ntBASIC22.47■■□□□ 1.19
TTC28Q96AY4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TTC28Q96AY4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.47■■□□□ 1.19
TTC28Q96AY4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.46■■□□□ 1.19
TTC28Q96AY4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.46■■□□□ 1.19
TTC28Q96AY4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC22.46■■□□□ 1.19
TTC28Q96AY4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.46■■□□□ 1.19
TTC28Q96AY4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TTC28Q96AY4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.46■■□□□ 1.19
TTC28Q96AY4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TTC28Q96AY4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TTC28Q96AY4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.45■■□□□ 1.18
TTC28Q96AY4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.45■■□□□ 1.18
TTC28Q96AY4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC22.45■■□□□ 1.18
TTC28Q96AY4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.45■■□□□ 1.18
TTC28Q96AY4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TTC28Q96AY4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.45■■□□□ 1.18
TTC28Q96AY4 CYP2T3P-201ENST00000601990 817 ntBASIC22.45■■□□□ 1.18
TTC28Q96AY4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.44■■□□□ 1.18
TTC28Q96AY4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TTC28Q96AY4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TTC28Q96AY4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
TTC28Q96AY4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TTC28Q96AY4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TTC28Q96AY4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
TTC28Q96AY4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TTC28Q96AY4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TTC28Q96AY4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.43■■□□□ 1.18
TTC28Q96AY4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TTC28Q96AY4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
TTC28Q96AY4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TTC28Q96AY4 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
TTC28Q96AY4 ALDH1A3-203ENST00000557963 1670 ntBASIC22.42■■□□□ 1.18
TTC28Q96AY4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TTC28Q96AY4 CD177P1-201ENST00000606252 935 ntBASIC22.42■■□□□ 1.18
TTC28Q96AY4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.42■■□□□ 1.18
TTC28Q96AY4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TTC28Q96AY4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TTC28Q96AY4 AC005224.4-201ENST00000583262 1652 ntBASIC22.41■■□□□ 1.18
TTC28Q96AY4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TTC28Q96AY4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
TTC28Q96AY4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.41■■□□□ 1.18
TTC28Q96AY4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TTC28Q96AY4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms