Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.53■■□□□ 1.2
CCHCR1Q8TD31 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 SRD5A1P1-201ENST00000442297 786 ntBASIC22.52■■□□□ 1.2
CCHCR1Q8TD31 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CCHCR1Q8TD31 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCHCR1Q8TD31 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCHCR1Q8TD31 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCHCR1Q8TD31 CA15P2-201ENST00000611168 834 ntBASIC22.51■■□□□ 1.19
CCHCR1Q8TD31 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 AL136116.3-201ENST00000402907 1138 ntBASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 MIR4466-201ENST00000606121 54 ntBASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 C17orf82-201ENST00000623772 1530 ntBASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCHCR1Q8TD31 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCHCR1Q8TD31 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCHCR1Q8TD31 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 AC004687.1-201ENST00000579003 1625 ntBASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.47■■□□□ 1.19
CCHCR1Q8TD31 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 AC092171.4-201ENST00000609130 632 ntBASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 AC241377.3-202ENST00000626088 1088 ntBASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 AC241585.3-202ENST00000628937 1088 ntBASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 AC245100.8-202ENST00000629247 1058 ntBASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCHCR1Q8TD31 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCHCR1Q8TD31 AC010542.4-201ENST00000563151 1910 ntBASIC22.45■■□□□ 1.18
CCHCR1Q8TD31 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms