Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 AC105233.4-201ENST00000642045 216 ntBASIC6.63□□□□□ -1.35
SYNE1Q8NF91 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 LINC00543-201ENST00000567234 1845 ntBASIC6.63□□□□□ -1.35
SYNE1Q8NF91 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 GXYLT1P5-201ENST00000614548 1189 ntBASIC6.63□□□□□ -1.35
SYNE1Q8NF91 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 AC073111.5-205ENST00000641717 521 ntBASIC6.63□□□□□ -1.35
SYNE1Q8NF91 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AC008687.6-201ENST00000596318 630 ntBASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SHD-204ENST00000599689 1729 ntTSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 LINC01529-204ENST00000636474 1715 ntBASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AL138781.1-201ENST00000566567 1274 ntBASIC6.62□□□□□ -1.35
SYNE1Q8NF91 GAMT-205ENST00000640762 751 ntTSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 GALNS-213ENST00000569433 723 ntTSL 3 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 MPST-204ENST00000404393 1329 ntTSL 5 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 AL355802.2-201ENST00000402069 882 ntBASIC6.62□□□□□ -1.35
SYNE1Q8NF91 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SYNE1Q8NF91 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 KRT18P11-201ENST00000435214 1283 ntBASIC6.61□□□□□ -1.35
SYNE1Q8NF91 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 ABHD17AP1-201ENST00000358206 933 ntBASIC6.61□□□□□ -1.35
SYNE1Q8NF91 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms