Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC097493.4-201ENST00000641197 219 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC15.99■□□□□ 0.15
PRKDCP78527 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PRKDCP78527 C2orf69P4-201ENST00000565394 541 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 AC013268.1-206ENST00000638368 961 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 AC112229.1-201ENST00000639295 961 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 AC092803.2-201ENST00000564287 1899 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKDCP78527 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PRKDCP78527 HLA-L-211ENST00000482052 1765 ntBASIC15.98■□□□□ 0.15
PRKDCP78527 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC15.98■□□□□ 0.15
PRKDCP78527 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 AP001160.3-201ENST00000601484 763 ntBASIC15.98■□□□□ 0.15
PRKDCP78527 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 AC144652.1-201ENST00000609974 1624 ntBASIC15.98■□□□□ 0.15
PRKDCP78527 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKDCP78527 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKDCP78527 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKDCP78527 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC15.98■□□□□ 0.15
PRKDCP78527 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.98■□□□□ 0.15
PRKDCP78527 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PRKDCP78527 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKDCP78527 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.97■□□□□ 0.15
PRKDCP78527 RN7SL850P-201ENST00000579959 291 ntBASIC15.97■□□□□ 0.15
PRKDCP78527 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PRKDCP78527 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PRKDCP78527 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PRKDCP78527 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
PRKDCP78527 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PRKDCP78527 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.96■□□□□ 0.15
PRKDCP78527 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.96■□□□□ 0.15
PRKDCP78527 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.96■□□□□ 0.15
PRKDCP78527 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PRKDCP78527 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PRKDCP78527 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.96■□□□□ 0.15
PRKDCP78527 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
PRKDCP78527 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PRKDCP78527 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PRKDCP78527 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.96■□□□□ 0.15
PRKDCP78527 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.96■□□□□ 0.15
PRKDCP78527 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC15.96■□□□□ 0.14
PRKDCP78527 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.96■□□□□ 0.14
PRKDCP78527 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.95■□□□□ 0.14
PRKDCP78527 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PRKDCP78527 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PRKDCP78527 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC15.95■□□□□ 0.14
PRKDCP78527 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC15.95■□□□□ 0.14
PRKDCP78527 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PRKDCP78527 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC15.95■□□□□ 0.14
PRKDCP78527 AL359736.2-201ENST00000621992 437 ntBASIC15.95■□□□□ 0.14
PRKDCP78527 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC15.95■□□□□ 0.14
PRKDCP78527 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PRKDCP78527 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 BET1L-204ENST00000410108 637 ntTSL 3 BASIC15.94■□□□□ 0.14
PRKDCP78527 AP003097.1-201ENST00000530657 1135 ntBASIC15.94■□□□□ 0.14
PRKDCP78527 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.94■□□□□ 0.14
PRKDCP78527 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC15.94■□□□□ 0.14
PRKDCP78527 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PRKDCP78527 TSPY15P-201ENST00000457163 923 ntBASIC15.94■□□□□ 0.14
PRKDCP78527 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PRKDCP78527 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PRKDCP78527 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PRKDCP78527 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PRKDCP78527 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PRKDCP78527 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PRKDCP78527 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms