Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LIM2P55344 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LIM2P55344 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 AC137767.1-201ENST00000602918 1920 ntBASIC20.61■□□□□ 0.89
LIM2P55344 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.6■□□□□ 0.89
LIM2P55344 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.6■□□□□ 0.89
LIM2P55344 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
LIM2P55344 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
LIM2P55344 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 AC242852.2-201ENST00000615738 1807 ntBASIC20.6■□□□□ 0.89
LIM2P55344 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.6■□□□□ 0.89
LIM2P55344 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIM2P55344 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIM2P55344 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.59■□□□□ 0.89
LIM2P55344 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
LIM2P55344 IGHV3-19-201ENST00000521488 291 ntBASIC20.59■□□□□ 0.89
LIM2P55344 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
LIM2P55344 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LIM2P55344 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIM2P55344 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIM2P55344 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIM2P55344 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIM2P55344 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
LIM2P55344 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.58■□□□□ 0.89
LIM2P55344 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LIM2P55344 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIM2P55344 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LIM2P55344 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIM2P55344 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIM2P55344 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LIM2P55344 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.58■□□□□ 0.89
LIM2P55344 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIM2P55344 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.58■□□□□ 0.89
LIM2P55344 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.58■□□□□ 0.89
LIM2P55344 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
LIM2P55344 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIM2P55344 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIM2P55344 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.57■□□□□ 0.88
LIM2P55344 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LIM2P55344 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LIM2P55344 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.57■□□□□ 0.88
LIM2P55344 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.57■□□□□ 0.88
LIM2P55344 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.57■□□□□ 0.88
LIM2P55344 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LIM2P55344 AC080038.3-201ENST00000623346 1952 ntBASIC20.57■□□□□ 0.88
LIM2P55344 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.57■□□□□ 0.88
LIM2P55344 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
LIM2P55344 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIM2P55344 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 TSPY26P-201ENST00000476365 1326 ntBASIC20.56■□□□□ 0.88
LIM2P55344 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.56■□□□□ 0.88
LIM2P55344 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.56■□□□□ 0.88
LIM2P55344 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.56■□□□□ 0.88
LIM2P55344 AC079089.2-201ENST00000531211 1277 ntBASIC20.56■□□□□ 0.88
LIM2P55344 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.56■□□□□ 0.88
LIM2P55344 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.56■□□□□ 0.88
LIM2P55344 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 OXCT2P1-201ENST00000447263 1535 ntBASIC20.56■□□□□ 0.88
LIM2P55344 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIM2P55344 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LIM2P55344 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.55■□□□□ 0.88
LIM2P55344 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
LIM2P55344 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.55■□□□□ 0.88
LIM2P55344 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.55■□□□□ 0.88
LIM2P55344 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIM2P55344 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.55■□□□□ 0.88
LIM2P55344 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.55■□□□□ 0.88
LIM2P55344 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms