Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC092437.1-201ENST00000624794 1048 ntBASIC19.83■□□□□ 0.77
RFC3P40938 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFC3P40938 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFC3P40938 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.76
RFC3P40938 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFC3P40938 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFC3P40938 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RFC3P40938 BX005040.4-201ENST00000637145 1518 ntBASIC19.82■□□□□ 0.76
RFC3P40938 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RFC3P40938 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.82■□□□□ 0.76
RFC3P40938 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RFC3P40938 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFC3P40938 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.82■□□□□ 0.76
RFC3P40938 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.82■□□□□ 0.76
RFC3P40938 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.82■□□□□ 0.76
RFC3P40938 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.82■□□□□ 0.76
RFC3P40938 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.82■□□□□ 0.76
RFC3P40938 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RFC3P40938 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 OXCT2P1-201ENST00000447263 1535 ntBASIC19.81■□□□□ 0.76
RFC3P40938 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.81■□□□□ 0.76
RFC3P40938 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 AC004911.1-201ENST00000416316 871 ntBASIC19.81■□□□□ 0.76
RFC3P40938 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.81■□□□□ 0.76
RFC3P40938 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 TPRG1LP1-201ENST00000598702 760 ntBASIC19.81■□□□□ 0.76
RFC3P40938 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RFC3P40938 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFC3P40938 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RFC3P40938 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RFC3P40938 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.8■□□□□ 0.76
RFC3P40938 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.8■□□□□ 0.76
RFC3P40938 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.8■□□□□ 0.76
RFC3P40938 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.8■□□□□ 0.76
RFC3P40938 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFC3P40938 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFC3P40938 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFC3P40938 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.79■□□□□ 0.76
RFC3P40938 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFC3P40938 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
RFC3P40938 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFC3P40938 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.79■□□□□ 0.76
RFC3P40938 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
RFC3P40938 KRT18P61-201ENST00000585825 1298 ntBASIC19.79■□□□□ 0.76
RFC3P40938 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.79■□□□□ 0.76
RFC3P40938 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
RFC3P40938 AC068473.5-201ENST00000616428 2072 ntBASIC19.79■□□□□ 0.76
RFC3P40938 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
RFC3P40938 LINC01960-201ENST00000563759 1884 ntBASIC19.78■□□□□ 0.76
RFC3P40938 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.78■□□□□ 0.76
RFC3P40938 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.78■□□□□ 0.76
RFC3P40938 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFC3P40938 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.78■□□□□ 0.76
RFC3P40938 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.77■□□□□ 0.76
RFC3P40938 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.77■□□□□ 0.76
RFC3P40938 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.77■□□□□ 0.76
RFC3P40938 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
RFC3P40938 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 AC090192.1-201ENST00000517740 490 ntBASIC19.77■□□□□ 0.76
RFC3P40938 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.77■□□□□ 0.76
RFC3P40938 RARRES2P11-201ENST00000635158 484 ntBASIC19.77■□□□□ 0.76
RFC3P40938 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.77■□□□□ 0.76
RFC3P40938 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
RFC3P40938 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFC3P40938 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms