Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.13■□□□□ 0.97
CDH3P22223 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.13■□□□□ 0.97
CDH3P22223 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.13■□□□□ 0.97
CDH3P22223 AC026271.2-201ENST00000428091 497 ntBASIC21.13■□□□□ 0.97
CDH3P22223 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.13■□□□□ 0.97
CDH3P22223 AC068587.7-201ENST00000641602 218 ntBASIC21.13■□□□□ 0.97
CDH3P22223 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.13■□□□□ 0.97
CDH3P22223 C1orf229-201ENST00000623686 2258 ntBASIC21.13■□□□□ 0.97
CDH3P22223 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.13■□□□□ 0.97
CDH3P22223 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CDH3P22223 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.13■□□□□ 0.97
CDH3P22223 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.12■□□□□ 0.97
CDH3P22223 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CDH3P22223 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.12■□□□□ 0.97
CDH3P22223 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.12■□□□□ 0.97
CDH3P22223 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.12■□□□□ 0.97
CDH3P22223 AC087239.1-201ENST00000622671 572 ntBASIC21.12■□□□□ 0.97
CDH3P22223 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CDH3P22223 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDH3P22223 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.11■□□□□ 0.97
CDH3P22223 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.11■□□□□ 0.97
CDH3P22223 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CDH3P22223 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH3P22223 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CDH3P22223 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH3P22223 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH3P22223 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.1■□□□□ 0.97
CDH3P22223 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH3P22223 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CDH3P22223 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.1■□□□□ 0.97
CDH3P22223 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH3P22223 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.1■□□□□ 0.97
CDH3P22223 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.1■□□□□ 0.97
CDH3P22223 AL358852.1-201ENST00000623174 1268 ntBASIC21.1■□□□□ 0.97
CDH3P22223 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH3P22223 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH3P22223 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.1■□□□□ 0.97
CDH3P22223 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDH3P22223 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CDH3P22223 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.09■□□□□ 0.97
CDH3P22223 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CDH3P22223 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.09■□□□□ 0.97
CDH3P22223 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDH3P22223 AC012414.1-201ENST00000556676 535 ntBASIC21.09■□□□□ 0.97
CDH3P22223 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH3P22223 MIR5787-201ENST00000611784 55 ntBASIC21.09■□□□□ 0.97
CDH3P22223 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.09■□□□□ 0.97
CDH3P22223 MIR6821-201ENST00000617625 74 ntBASIC21.09■□□□□ 0.97
CDH3P22223 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.09■□□□□ 0.97
CDH3P22223 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH3P22223 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.09■□□□□ 0.97
CDH3P22223 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH3P22223 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH3P22223 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.09■□□□□ 0.97
CDH3P22223 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.09■□□□□ 0.97
CDH3P22223 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.08■□□□□ 0.97
CDH3P22223 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH3P22223 AC097381.1-201ENST00000429019 1296 ntBASIC21.08■□□□□ 0.97
CDH3P22223 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH3P22223 AL121603.2-201ENST00000557373 2117 ntBASIC21.08■□□□□ 0.96
CDH3P22223 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDH3P22223 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDH3P22223 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.08■□□□□ 0.96
CDH3P22223 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.07■□□□□ 0.96
CDH3P22223 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 AL354811.1-201ENST00000610286 706 ntBASIC21.07■□□□□ 0.96
CDH3P22223 MIR6084-201ENST00000622012 110 ntBASIC21.07■□□□□ 0.96
CDH3P22223 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms