Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SPTA1P02549 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SPTA1P02549 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SPTA1P02549 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SPTA1P02549 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SPTA1P02549 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
SPTA1P02549 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
SPTA1P02549 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.78■□□□□ 0.76
SPTA1P02549 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.78■□□□□ 0.76
SPTA1P02549 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.78■□□□□ 0.76
SPTA1P02549 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SPTA1P02549 AC005224.4-201ENST00000583262 1652 ntBASIC19.78■□□□□ 0.76
SPTA1P02549 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SPTA1P02549 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.78■□□□□ 0.76
SPTA1P02549 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.78■□□□□ 0.76
SPTA1P02549 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.77■□□□□ 0.76
SPTA1P02549 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.77■□□□□ 0.76
SPTA1P02549 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.77■□□□□ 0.76
SPTA1P02549 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SPTA1P02549 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.77■□□□□ 0.76
SPTA1P02549 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SPTA1P02549 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SPTA1P02549 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SPTA1P02549 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SPTA1P02549 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.77■□□□□ 0.76
SPTA1P02549 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.77■□□□□ 0.76
SPTA1P02549 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.76■□□□□ 0.75
SPTA1P02549 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.76■□□□□ 0.75
SPTA1P02549 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.76■□□□□ 0.75
SPTA1P02549 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.76■□□□□ 0.75
SPTA1P02549 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.76■□□□□ 0.75
SPTA1P02549 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.76■□□□□ 0.75
SPTA1P02549 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SPTA1P02549 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.76■□□□□ 0.75
SPTA1P02549 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.76■□□□□ 0.75
SPTA1P02549 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 AC006058.3-201ENST00000606217 1069 ntBASIC19.75■□□□□ 0.75
SPTA1P02549 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.75■□□□□ 0.75
SPTA1P02549 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.75■□□□□ 0.75
SPTA1P02549 AC010331.1-201ENST00000611423 582 ntBASIC19.75■□□□□ 0.75
SPTA1P02549 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SPTA1P02549 AC055733.4-201ENST00000638462 1354 ntBASIC19.75■□□□□ 0.75
SPTA1P02549 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.74■□□□□ 0.75
SPTA1P02549 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
SPTA1P02549 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.74■□□□□ 0.75
SPTA1P02549 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.74■□□□□ 0.75
SPTA1P02549 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SPTA1P02549 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SPTA1P02549 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.74■□□□□ 0.75
SPTA1P02549 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SPTA1P02549 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SPTA1P02549 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SPTA1P02549 AC211429.1-201ENST00000415277 523 ntBASIC19.74■□□□□ 0.75
SPTA1P02549 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.74■□□□□ 0.75
SPTA1P02549 AC128676.1-201ENST00000454392 318 ntBASIC19.74■□□□□ 0.75
SPTA1P02549 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.74■□□□□ 0.75
SPTA1P02549 AC068587.7-201ENST00000641602 218 ntBASIC19.74■□□□□ 0.75
SPTA1P02549 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.74■□□□□ 0.75
SPTA1P02549 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SPTA1P02549 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.73■□□□□ 0.75
SPTA1P02549 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.73■□□□□ 0.75
SPTA1P02549 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.73■□□□□ 0.75
SPTA1P02549 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SPTA1P02549 MYC-209ENST00000641252 345 ntBASIC19.73■□□□□ 0.75
SPTA1P02549 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SPTA1P02549 AC009237.3-201ENST00000393279 1427 ntBASIC19.73■□□□□ 0.75
SPTA1P02549 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SPTA1P02549 AL158047.1-201ENST00000445918 881 ntBASIC19.72■□□□□ 0.75
SPTA1P02549 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.72■□□□□ 0.75
SPTA1P02549 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms