Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTCD1O75127 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC28.03■■■□□ 2.08
PTCD1O75127 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTCD1O75127 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC28.03■■■□□ 2.08
PTCD1O75127 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTCD1O75127 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
PTCD1O75127 AC009237.3-201ENST00000393279 1427 ntBASIC28.02■■■□□ 2.08
PTCD1O75127 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PTCD1O75127 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.02■■■□□ 2.08
PTCD1O75127 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PTCD1O75127 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC28.02■■■□□ 2.08
PTCD1O75127 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC28.02■■■□□ 2.08
PTCD1O75127 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
PTCD1O75127 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
PTCD1O75127 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
PTCD1O75127 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.01■■■□□ 2.07
PTCD1O75127 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC28.01■■■□□ 2.07
PTCD1O75127 UBE2DNL-204ENST00000602536 740 ntBASIC28.01■■■□□ 2.07
PTCD1O75127 GAMT-205ENST00000640762 751 ntTSL 5 BASIC28.01■■■□□ 2.07
PTCD1O75127 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
PTCD1O75127 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PTCD1O75127 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
PTCD1O75127 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC28■■■□□ 2.07
PTCD1O75127 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC28■■■□□ 2.07
PTCD1O75127 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
PTCD1O75127 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28■■■□□ 2.07
PTCD1O75127 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
PTCD1O75127 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
PTCD1O75127 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC27.99■■■□□ 2.07
PTCD1O75127 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC27.99■■■□□ 2.07
PTCD1O75127 DUX4L16-201ENST00000555130 1264 ntBASIC27.99■■■□□ 2.07
PTCD1O75127 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC27.99■■■□□ 2.07
PTCD1O75127 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC27.99■■■□□ 2.07
PTCD1O75127 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
PTCD1O75127 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PTCD1O75127 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PTCD1O75127 DUSP8P5-201ENST00000422884 1815 ntBASIC27.98■■■□□ 2.07
PTCD1O75127 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
PTCD1O75127 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.98■■■□□ 2.07
PTCD1O75127 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.98■■■□□ 2.07
PTCD1O75127 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PTCD1O75127 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.98■■■□□ 2.07
PTCD1O75127 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
PTCD1O75127 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.98■■■□□ 2.07
PTCD1O75127 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
PTCD1O75127 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
PTCD1O75127 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC27.97■■■□□ 2.07
PTCD1O75127 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 AC083906.2-201ENST00000511578 360 ntBASIC27.97■■■□□ 2.07
PTCD1O75127 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC27.97■■■□□ 2.07
PTCD1O75127 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
PTCD1O75127 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC27.97■■■□□ 2.07
PTCD1O75127 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
PTCD1O75127 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
PTCD1O75127 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC27.96■■■□□ 2.07
PTCD1O75127 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 APTR-205ENST00000447009 902 ntTSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.96■■■□□ 2.07
PTCD1O75127 ANOS2P-203ENST00000472227 1816 ntBASIC27.96■■■□□ 2.07
PTCD1O75127 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC27.96■■■□□ 2.07
PTCD1O75127 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC27.95■■■□□ 2.06
PTCD1O75127 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.95■■■□□ 2.06
PTCD1O75127 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.95■■■□□ 2.06
PTCD1O75127 AL121832.2-201ENST00000610979 668 ntBASIC27.95■■■□□ 2.06
PTCD1O75127 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
PTCD1O75127 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
PTCD1O75127 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
PTCD1O75127 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC27.95■■■□□ 2.06
PTCD1O75127 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
PTCD1O75127 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
PTCD1O75127 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PTCD1O75127 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.94■■■□□ 2.06
PTCD1O75127 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PTCD1O75127 AP001160.3-201ENST00000601484 763 ntBASIC27.94■■■□□ 2.06
PTCD1O75127 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC27.94■■■□□ 2.06
PTCD1O75127 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
PTCD1O75127 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PTCD1O75127 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms