Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.79■■□□□ 1.08
SHOX2O60902 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHOX2O60902 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHOX2O60902 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.79■■□□□ 1.08
SHOX2O60902 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SHOX2O60902 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.79■■□□□ 1.08
SHOX2O60902 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHOX2O60902 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SHOX2O60902 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHOX2O60902 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHOX2O60902 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.79■■□□□ 1.08
SHOX2O60902 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
SHOX2O60902 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.78■■□□□ 1.08
SHOX2O60902 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SHOX2O60902 GABARAPL3-202ENST00000624044 1851 ntBASIC21.78■■□□□ 1.08
SHOX2O60902 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.78■■□□□ 1.08
SHOX2O60902 AC026202.3-201ENST00000600805 1127 ntBASIC21.78■■□□□ 1.08
SHOX2O60902 RAP2CP1-202ENST00000605179 643 ntBASIC21.78■■□□□ 1.08
SHOX2O60902 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.78■■□□□ 1.08
SHOX2O60902 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 AFG3L1P-217ENST00000557444 2447 ntBASIC21.78■■□□□ 1.08
SHOX2O60902 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHOX2O60902 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.78■■□□□ 1.08
SHOX2O60902 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.77■■□□□ 1.08
SHOX2O60902 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SHOX2O60902 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SHOX2O60902 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SHOX2O60902 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.76■■□□□ 1.07
SHOX2O60902 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 AC022413.1-201ENST00000624602 984 ntBASIC21.76■■□□□ 1.07
SHOX2O60902 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SHOX2O60902 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.76■■□□□ 1.07
SHOX2O60902 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHOX2O60902 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SHOX2O60902 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SHOX2O60902 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SHOX2O60902 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
SHOX2O60902 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SHOX2O60902 AL592295.1-201ENST00000400984 884 ntBASIC21.75■■□□□ 1.07
SHOX2O60902 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.75■■□□□ 1.07
SHOX2O60902 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.75■■□□□ 1.07
SHOX2O60902 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHOX2O60902 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
SHOX2O60902 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.74■■□□□ 1.07
SHOX2O60902 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.74■■□□□ 1.07
SHOX2O60902 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SHOX2O60902 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.74■■□□□ 1.07
SHOX2O60902 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHOX2O60902 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
SHOX2O60902 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.73■■□□□ 1.07
SHOX2O60902 MIR639-201ENST00000384974 98 ntBASIC21.73■■□□□ 1.07
SHOX2O60902 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 AP005212.1-201ENST00000581547 1997 ntBASIC21.73■■□□□ 1.07
SHOX2O60902 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHOX2O60902 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SHOX2O60902 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.73■■□□□ 1.07
SHOX2O60902 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms