Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LMX1BO60663 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.03■□□□□ 0.64
LMX1BO60663 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LMX1BO60663 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1BO60663 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1BO60663 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1BO60663 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.02■□□□□ 0.64
LMX1BO60663 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.02■□□□□ 0.64
LMX1BO60663 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.02■□□□□ 0.64
LMX1BO60663 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1BO60663 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LMX1BO60663 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LMX1BO60663 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
LMX1BO60663 SYT6-210ENST00000641643 1587 ntBASIC19.02■□□□□ 0.63
LMX1BO60663 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 MIR939-201ENST00000401314 82 ntBASIC19.01■□□□□ 0.63
LMX1BO60663 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.01■□□□□ 0.63
LMX1BO60663 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.01■□□□□ 0.63
LMX1BO60663 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LMX1BO60663 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1BO60663 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
LMX1BO60663 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LMX1BO60663 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19■□□□□ 0.63
LMX1BO60663 AC091305.1-201ENST00000479476 895 ntBASIC19■□□□□ 0.63
LMX1BO60663 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19■□□□□ 0.63
LMX1BO60663 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19■□□□□ 0.63
LMX1BO60663 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1BO60663 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.99■□□□□ 0.63
LMX1BO60663 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LMX1BO60663 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LMX1BO60663 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.99■□□□□ 0.63
LMX1BO60663 AP001330.3-201ENST00000520123 633 ntBASIC18.99■□□□□ 0.63
LMX1BO60663 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.99■□□□□ 0.63
LMX1BO60663 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1BO60663 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1BO60663 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
LMX1BO60663 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 C17orf82-201ENST00000623772 1530 ntBASIC18.99■□□□□ 0.63
LMX1BO60663 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1BO60663 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LMX1BO60663 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.98■□□□□ 0.63
LMX1BO60663 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.98■□□□□ 0.63
LMX1BO60663 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.98■□□□□ 0.63
LMX1BO60663 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LMX1BO60663 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1BO60663 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1BO60663 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LMX1BO60663 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.97■□□□□ 0.63
LMX1BO60663 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.97■□□□□ 0.63
LMX1BO60663 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1BO60663 MIR6821-201ENST00000617625 74 ntBASIC18.97■□□□□ 0.63
LMX1BO60663 AC010542.4-201ENST00000563151 1910 ntBASIC18.97■□□□□ 0.63
LMX1BO60663 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.97■□□□□ 0.63
LMX1BO60663 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.97■□□□□ 0.63
LMX1BO60663 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.97■□□□□ 0.63
LMX1BO60663 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1BO60663 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1BO60663 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms