Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.18■□□□□ 0.82
PRKNO60260 AC233723.2-201ENST00000623798 2106 ntBASIC20.18■□□□□ 0.82
PRKNO60260 OXCT2P1-201ENST00000447263 1535 ntBASIC20.18■□□□□ 0.82
PRKNO60260 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PRKNO60260 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PRKNO60260 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.18■□□□□ 0.82
PRKNO60260 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PRKNO60260 AC087623.3-201ENST00000607047 1098 ntBASIC20.18■□□□□ 0.82
PRKNO60260 MIR6821-201ENST00000617625 74 ntBASIC20.18■□□□□ 0.82
PRKNO60260 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.18■□□□□ 0.82
PRKNO60260 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PRKNO60260 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
PRKNO60260 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.18■□□□□ 0.82
PRKNO60260 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.18■□□□□ 0.82
PRKNO60260 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PRKNO60260 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.17■□□□□ 0.82
PRKNO60260 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.17■□□□□ 0.82
PRKNO60260 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 AC097381.1-201ENST00000429019 1296 ntBASIC20.17■□□□□ 0.82
PRKNO60260 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.17■□□□□ 0.82
PRKNO60260 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.17■□□□□ 0.82
PRKNO60260 AL354811.1-201ENST00000610286 706 ntBASIC20.17■□□□□ 0.82
PRKNO60260 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKNO60260 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PRKNO60260 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.16■□□□□ 0.82
PRKNO60260 AC137767.1-201ENST00000602918 1920 ntBASIC20.16■□□□□ 0.82
PRKNO60260 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.16■□□□□ 0.82
PRKNO60260 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.16■□□□□ 0.82
PRKNO60260 SMUG1P1-201ENST00000590640 811 ntBASIC20.16■□□□□ 0.82
PRKNO60260 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
PRKNO60260 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PRKNO60260 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PRKNO60260 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PRKNO60260 AC027612.3-201ENST00000413684 1047 ntBASIC20.15■□□□□ 0.82
PRKNO60260 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.15■□□□□ 0.82
PRKNO60260 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PRKNO60260 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.15■□□□□ 0.82
PRKNO60260 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.15■□□□□ 0.82
PRKNO60260 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.15■□□□□ 0.82
PRKNO60260 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PRKNO60260 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.15■□□□□ 0.82
PRKNO60260 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PRKNO60260 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.14■□□□□ 0.81
PRKNO60260 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.14■□□□□ 0.81
PRKNO60260 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
PRKNO60260 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.14■□□□□ 0.81
PRKNO60260 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.14■□□□□ 0.81
PRKNO60260 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.14■□□□□ 0.81
PRKNO60260 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.14■□□□□ 0.81
PRKNO60260 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.14■□□□□ 0.81
PRKNO60260 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
PRKNO60260 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PRKNO60260 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.13■□□□□ 0.81
PRKNO60260 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
PRKNO60260 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PRKNO60260 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 YBX1P1-201ENST00000445822 960 ntBASIC20.13■□□□□ 0.81
PRKNO60260 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.13■□□□□ 0.81
PRKNO60260 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKNO60260 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms