Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.46■■□□□ 1.51
MSH4O15457 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH4O15457 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 AC127496.7-201ENST00000625110 1798 ntBASIC24.46■■□□□ 1.51
MSH4O15457 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH4O15457 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
MSH4O15457 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.45■■□□□ 1.51
MSH4O15457 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH4O15457 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH4O15457 AC123595.1-201ENST00000440769 1046 ntBASIC24.45■■□□□ 1.5
MSH4O15457 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.45■■□□□ 1.5
MSH4O15457 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.45■■□□□ 1.5
MSH4O15457 TPRG1LP1-201ENST00000598702 760 ntBASIC24.45■■□□□ 1.5
MSH4O15457 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH4O15457 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.45■■□□□ 1.5
MSH4O15457 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
MSH4O15457 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH4O15457 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
MSH4O15457 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH4O15457 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH4O15457 AC080038.3-201ENST00000623346 1952 ntBASIC24.44■■□□□ 1.5
MSH4O15457 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH4O15457 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH4O15457 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
MSH4O15457 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.44■■□□□ 1.5
MSH4O15457 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
MSH4O15457 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH4O15457 OR7E47P-201ENST00000546390 1422 ntBASIC24.44■■□□□ 1.5
MSH4O15457 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH4O15457 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH4O15457 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.43■■□□□ 1.5
MSH4O15457 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH4O15457 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH4O15457 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH4O15457 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH4O15457 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH4O15457 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH4O15457 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH4O15457 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH4O15457 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH4O15457 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
MSH4O15457 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
MSH4O15457 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH4O15457 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH4O15457 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH4O15457 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
MSH4O15457 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
MSH4O15457 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH4O15457 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH4O15457 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH4O15457 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
MSH4O15457 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
MSH4O15457 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH4O15457 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
MSH4O15457 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.4■■□□□ 1.5
MSH4O15457 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH4O15457 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH4O15457 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH4O15457 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
MSH4O15457 CCDC92B-201ENST00000575506 885 ntBASIC24.39■■□□□ 1.49
MSH4O15457 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH4O15457 TERF1P2-201ENST00000583350 1212 ntBASIC24.39■■□□□ 1.49
MSH4O15457 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
MSH4O15457 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.39■■□□□ 1.49
MSH4O15457 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH4O15457 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH4O15457 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH4O15457 LINC02228-203ENST00000641970 1355 ntBASIC24.39■■□□□ 1.49
MSH4O15457 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH4O15457 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH4O15457 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH4O15457 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH4O15457 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH4O15457 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH4O15457 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH4O15457 MIR5787-201ENST00000611784 55 ntBASIC24.38■■□□□ 1.49
MSH4O15457 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH4O15457 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.37■■□□□ 1.49
MSH4O15457 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms