Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 AC012618.2-201ENST00000428058 849 ntBASIC17.15■□□□□ 0.34
COL6A5A8TX70 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A5A8TX70 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A5A8TX70 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A5A8TX70 CYP2T1P-201ENST00000432607 1285 ntBASIC17.14■□□□□ 0.33
COL6A5A8TX70 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC007322.4-201ENST00000509611 723 ntBASIC17.14■□□□□ 0.33
COL6A5A8TX70 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC010501.1-201ENST00000606270 1962 ntBASIC17.14■□□□□ 0.33
COL6A5A8TX70 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A5A8TX70 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A5A8TX70 AC016405.3-201ENST00000607710 860 ntBASIC17.14■□□□□ 0.33
COL6A5A8TX70 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC17.14■□□□□ 0.33
COL6A5A8TX70 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A5A8TX70 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A5A8TX70 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL6A5A8TX70 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL6A5A8TX70 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL6A5A8TX70 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A5A8TX70 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A5A8TX70 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 LINC01529-204ENST00000636474 1715 ntBASIC17.12■□□□□ 0.33
COL6A5A8TX70 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 RN7SL850P-201ENST00000579959 291 ntBASIC17.12■□□□□ 0.33
COL6A5A8TX70 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A5A8TX70 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 TMPOP1-202ENST00000424642 1267 ntBASIC17.11■□□□□ 0.33
COL6A5A8TX70 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 RPPH1-201ENST00000516869 333 ntBASIC17.11■□□□□ 0.33
COL6A5A8TX70 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.11■□□□□ 0.33
COL6A5A8TX70 AL359736.2-201ENST00000621992 437 ntBASIC17.11■□□□□ 0.33
COL6A5A8TX70 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A5A8TX70 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A5A8TX70 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 PKM-203ENST00000389093 2279 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 AC012306.2-201ENST00000609350 630 ntBASIC17.1■□□□□ 0.33
COL6A5A8TX70 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A5A8TX70 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A5A8TX70 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 KRT18P35-201ENST00000510488 1269 ntBASIC17.09■□□□□ 0.33
COL6A5A8TX70 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A5A8TX70 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A5A8TX70 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms