Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 AL031602.1-201ENST00000633169 911 ntBASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.75■■□□□ 1.23
PCDHA3Q9Y5H8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHA3Q9Y5H8 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 AL024507.2-201ENST00000606070 2574 ntBASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHA3Q9Y5H8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 AC133637.1-201ENST00000624115 1537 ntBASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 KRT16P3-201ENST00000439127 1283 ntBASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHA3Q9Y5H8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 AC006455.2-201ENST00000429931 906 ntBASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
PCDHA3Q9Y5H8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 pRNA.6-201ENST00000610482 90 ntBASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 pRNA.5-201ENST00000612139 90 ntBASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 pRNA.11-201ENST00000618423 90 ntBASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 pRNA.13-201ENST00000619112 90 ntBASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHA3Q9Y5H8 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 AC244015.2-201ENST00000616358 1861 ntBASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHA3Q9Y5H8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms