Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 LINC01529-204ENST00000636474 1715 ntBASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.6
PTPN22Q9Y2R2 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.08■■□□□ 1.6
PTPN22Q9Y2R2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 AP006294.2-201ENST00000641667 209 ntBASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTPN22Q9Y2R2 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 AC105036.2-201ENST00000569468 176 ntBASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 AC104187.1-201ENST00000607510 612 ntBASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTPN22Q9Y2R2 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 RNA5SP413-201ENST00000516373 109 ntBASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 AC133552.2-202ENST00000575694 574 ntBASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 UBE2DNL-204ENST00000602536 740 ntBASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTPN22Q9Y2R2 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTPN22Q9Y2R2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 AC022211.4-201ENST00000625094 2161 ntBASIC25.03■■□□□ 1.6
PTPN22Q9Y2R2 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 AC142381.3-201ENST00000568208 1670 ntBASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 AC098590.1-201ENST00000468126 897 ntBASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
PTPN22Q9Y2R2 AC144652.1-201ENST00000609974 1624 ntBASIC25.01■■□□□ 1.59
PTPN22Q9Y2R2 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTPN22Q9Y2R2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC25.01■■□□□ 1.59
PTPN22Q9Y2R2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.01■■□□□ 1.59
PTPN22Q9Y2R2 AC068587.7-201ENST00000641602 218 ntBASIC25.01■■□□□ 1.59
PTPN22Q9Y2R2 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 DUSP5P2-201ENST00000426873 1033 ntBASIC25■■□□□ 1.59
PTPN22Q9Y2R2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTPN22Q9Y2R2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 AC138932.3-201ENST00000567634 1902 ntBASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 MIR4758-201ENST00000577688 71 ntBASIC24.99■■□□□ 1.59
PTPN22Q9Y2R2 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 AL596275.1-201ENST00000423464 877 ntBASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTPN22Q9Y2R2 MYCNOS-205ENST00000641950 531 ntBASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms