Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC009237.3-201ENST00000393279 1427 ntBASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 DUSP8P3-201ENST00000399571 1760 ntBASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 LINC01124-201ENST00000409786 2117 ntBASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
UPF3AQ9H1J1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 DUX4L16-201ENST00000555130 1264 ntBASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 AC020928.2-201ENST00000588717 2197 ntBASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UPF3AQ9H1J1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 AL121832.2-201ENST00000610979 668 ntBASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 AC231657.2-201ENST00000624556 255 ntBASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
UPF3AQ9H1J1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
UPF3AQ9H1J1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UPF3AQ9H1J1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
UPF3AQ9H1J1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.33■■□□□ 1.48
UPF3AQ9H1J1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
UPF3AQ9H1J1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 GUSBP6-202ENST00000438529 1198 ntBASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 TSPY6P-201ENST00000448518 926 ntBASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 SLC7A5P2-201ENST00000553010 536 ntBASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 UBE2DNL-204ENST00000602536 740 ntBASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPF3AQ9H1J1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 AC083906.2-201ENST00000511578 360 ntBASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPF3AQ9H1J1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 CD99P1-205ENST00000527459 561 ntBASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 TMEM191A-211ENST00000637163 1067 ntBASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms