Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 AL137784.2-201ENST00000607332 1000 ntBASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TRAIPQ9BWF2 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.85■■□□□ 1.41
TRAIPQ9BWF2 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 BX005040.4-201ENST00000637145 1518 ntBASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 SMUG1P1-201ENST00000590640 811 ntBASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 RARRES2P11-201ENST00000635158 484 ntBASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 OXCT2P1-201ENST00000447263 1535 ntBASIC23.84■■□□□ 1.41
TRAIPQ9BWF2 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
TRAIPQ9BWF2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
TRAIPQ9BWF2 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC23.83■■□□□ 1.4
TRAIPQ9BWF2 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.83■■□□□ 1.4
TRAIPQ9BWF2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.83■■□□□ 1.4
TRAIPQ9BWF2 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 AC092068.2-201ENST00000590491 1708 ntBASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRAIPQ9BWF2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRAIPQ9BWF2 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.8■■□□□ 1.4
TRAIPQ9BWF2 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAIPQ9BWF2 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms