Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC005229.4-201ENST00000610085 2198 ntBASIC18.91■□□□□ 0.62
NKX3-1Q99801 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 AC239859.2-201ENST00000444165 318 ntBASIC18.9■□□□□ 0.62
NKX3-1Q99801 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NKX3-1Q99801 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.9■□□□□ 0.62
NKX3-1Q99801 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
NKX3-1Q99801 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.89■□□□□ 0.61
NKX3-1Q99801 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 AC021242.3-201ENST00000607598 1377 ntBASIC18.89■□□□□ 0.61
NKX3-1Q99801 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
NKX3-1Q99801 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX3-1Q99801 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
NKX3-1Q99801 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.88■□□□□ 0.61
NKX3-1Q99801 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX3-1Q99801 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX3-1Q99801 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX3-1Q99801 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.87■□□□□ 0.61
NKX3-1Q99801 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX3-1Q99801 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.87■□□□□ 0.61
NKX3-1Q99801 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX3-1Q99801 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
NKX3-1Q99801 KRT125P-201ENST00000546827 989 ntBASIC18.86■□□□□ 0.61
NKX3-1Q99801 MIR6722-201ENST00000617286 78 ntBASIC18.86■□□□□ 0.61
NKX3-1Q99801 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX3-1Q99801 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX3-1Q99801 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NKX3-1Q99801 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.85■□□□□ 0.61
NKX3-1Q99801 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 BX664725.1-201ENST00000438252 379 ntBASIC18.85■□□□□ 0.61
NKX3-1Q99801 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX3-1Q99801 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
NKX3-1Q99801 AC009102.2-201ENST00000606772 1639 ntBASIC18.85■□□□□ 0.61
NKX3-1Q99801 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms