Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 AC010141.3-201ENST00000456659 717 ntBASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 LINC01023-201ENST00000606054 436 ntBASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 REXO1L12P-201ENST00000622156 912 ntBASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 AC013268.1-206ENST00000638368 961 ntBASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 AC112229.1-201ENST00000639295 961 ntBASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC26.11■■□□□ 1.77
SMC1BQ8NDV3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 MIR4497-201ENST00000583208 89 ntBASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 MYC-209ENST00000641252 345 ntBASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SMC1BQ8NDV3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 OR10C1-204ENST00000622521 1039 ntBASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.09■■□□□ 1.77
SMC1BQ8NDV3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 KRT18P21-201ENST00000515767 1272 ntBASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 AC005224.4-201ENST00000583262 1652 ntBASIC26.08■■□□□ 1.77
SMC1BQ8NDV3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.08■■□□□ 1.76
SMC1BQ8NDV3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 AC073648.6-201ENST00000641589 218 ntBASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC1BQ8NDV3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 AC068338.2-201ENST00000563278 1430 ntBASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.06■■□□□ 1.76
SMC1BQ8NDV3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 AC026366.1-201ENST00000488803 879 ntBASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 AC144652.1-201ENST00000609974 1624 ntBASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
SMC1BQ8NDV3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 BX276092.2-201ENST00000417668 665 ntBASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC1BQ8NDV3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 AL512625.2-201ENST00000417533 625 ntBASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 UNC93B5-201ENST00000530315 699 ntBASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SMC1BQ8NDV3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms