Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 AC006970.2-201ENST00000450065 779 ntBASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USHBP1Q8N6Y0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 ANOS2P-203ENST00000472227 1816 ntBASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.92■■■□□ 2.22
USHBP1Q8N6Y0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 AC005224.4-201ENST00000583262 1652 ntBASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 MIR663A-201ENST00000385250 93 ntBASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
USHBP1Q8N6Y0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 AC104187.1-201ENST00000607510 612 ntBASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC28.9■■■□□ 2.22
USHBP1Q8N6Y0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 AL355802.2-201ENST00000402069 882 ntBASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC28.89■■■□□ 2.22
USHBP1Q8N6Y0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
USHBP1Q8N6Y0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.21
USHBP1Q8N6Y0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 MFSD11-216ENST00000590393 1141 ntBASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 AL109923.1-201ENST00000618799 583 ntBASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
USHBP1Q8N6Y0 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.87■■■□□ 2.21
USHBP1Q8N6Y0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
USHBP1Q8N6Y0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 DUSP8P5-201ENST00000422884 1815 ntBASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 NCF1B-203ENST00000435988 1254 ntBASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC28.85■■■□□ 2.21
USHBP1Q8N6Y0 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
USHBP1Q8N6Y0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USHBP1Q8N6Y0 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms