Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
DEPDC4Q8N2C3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
DEPDC4Q8N2C3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 AF131216.4-201ENST00000638924 1588 ntBASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
DEPDC4Q8N2C3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 MIR6724-1-201ENST00000616420 92 ntBASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 MIR6724-2-201ENST00000616483 92 ntBASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 MIR6724-4-201ENST00000617390 92 ntBASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 MIR6724-3-201ENST00000622482 92 ntBASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
DEPDC4Q8N2C3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
DEPDC4Q8N2C3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 AL356740.2-201ENST00000601559 647 ntBASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
DEPDC4Q8N2C3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.08■□□□□ 0.8
DEPDC4Q8N2C3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
DEPDC4Q8N2C3 FAM99A-202ENST00000538190 1989 ntBASIC20.08■□□□□ 0.8
DEPDC4Q8N2C3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.08■□□□□ 0.8
DEPDC4Q8N2C3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DEPDC4Q8N2C3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 AL121603.2-201ENST00000557373 2117 ntBASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms