Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
LINC00643Q86TS7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 AC079630.1-202ENST00000618127 1840 ntBASIC13.66□□□□□ -0.22
LINC00643Q86TS7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LINC00643Q86TS7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00643Q86TS7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00643Q86TS7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 AC244015.2-201ENST00000616358 1861 ntBASIC13.63□□□□□ -0.23
LINC00643Q86TS7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms