Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.27■■□□□ 1.48
NKX3-2P78367 AC083906.2-201ENST00000511578 360 ntBASIC24.27■■□□□ 1.48
NKX3-2P78367 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX3-2P78367 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX3-2P78367 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX3-2P78367 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
NKX3-2P78367 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
NKX3-2P78367 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX3-2P78367 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
NKX3-2P78367 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.26■■□□□ 1.47
NKX3-2P78367 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.26■■□□□ 1.47
NKX3-2P78367 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
NKX3-2P78367 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.26■■□□□ 1.47
NKX3-2P78367 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX3-2P78367 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
NKX3-2P78367 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.25■■□□□ 1.47
NKX3-2P78367 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.25■■□□□ 1.47
NKX3-2P78367 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.25■■□□□ 1.47
NKX3-2P78367 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 TMEM191A-211ENST00000637163 1067 ntBASIC24.25■■□□□ 1.47
NKX3-2P78367 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.25■■□□□ 1.47
NKX3-2P78367 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 AC055733.4-201ENST00000638462 1354 ntBASIC24.25■■□□□ 1.47
NKX3-2P78367 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX3-2P78367 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.24■■□□□ 1.47
NKX3-2P78367 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.24■■□□□ 1.47
NKX3-2P78367 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NKX3-2P78367 METTL15-202ENST00000403099 795 ntTSL 5 BASIC24.24■■□□□ 1.47
NKX3-2P78367 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.24■■□□□ 1.47
NKX3-2P78367 UBE2DNL-204ENST00000602536 740 ntBASIC24.24■■□□□ 1.47
NKX3-2P78367 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC24.24■■□□□ 1.47
NKX3-2P78367 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.24■■□□□ 1.47
NKX3-2P78367 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
NKX3-2P78367 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX3-2P78367 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.24■■□□□ 1.47
NKX3-2P78367 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
NKX3-2P78367 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.23■■□□□ 1.47
NKX3-2P78367 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NKX3-2P78367 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.23■■□□□ 1.47
NKX3-2P78367 AC007322.1-201ENST00000426983 750 ntBASIC24.23■■□□□ 1.47
NKX3-2P78367 CD99P1-205ENST00000527459 561 ntBASIC24.23■■□□□ 1.47
NKX3-2P78367 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.23■■□□□ 1.47
NKX3-2P78367 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NKX3-2P78367 MYCNOS-205ENST00000641950 531 ntBASIC24.23■■□□□ 1.47
NKX3-2P78367 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
NKX3-2P78367 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NKX3-2P78367 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NKX3-2P78367 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
NKX3-2P78367 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.22■■□□□ 1.47
NKX3-2P78367 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.22■■□□□ 1.47
NKX3-2P78367 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.22■■□□□ 1.47
NKX3-2P78367 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.22■■□□□ 1.47
NKX3-2P78367 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.22■■□□□ 1.47
NKX3-2P78367 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.22■■□□□ 1.47
NKX3-2P78367 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.22■■□□□ 1.47
NKX3-2P78367 AP001160.3-201ENST00000601484 763 ntBASIC24.22■■□□□ 1.47
NKX3-2P78367 AC005181.1-201ENST00000604782 1256 ntBASIC24.22■■□□□ 1.47
NKX3-2P78367 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.22■■□□□ 1.47
NKX3-2P78367 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NKX3-2P78367 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.22■■□□□ 1.47
NKX3-2P78367 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NKX3-2P78367 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NKX3-2P78367 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC24.21■■□□□ 1.47
NKX3-2P78367 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.21■■□□□ 1.47
NKX3-2P78367 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.21■■□□□ 1.47
NKX3-2P78367 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.21■■□□□ 1.47
NKX3-2P78367 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.21■■□□□ 1.47
NKX3-2P78367 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
NKX3-2P78367 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.2■■□□□ 1.47
NKX3-2P78367 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC24.2■■□□□ 1.47
NKX3-2P78367 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.2■■□□□ 1.46
NKX3-2P78367 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
NKX3-2P78367 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.2■■□□□ 1.46
NKX3-2P78367 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.2■■□□□ 1.46
NKX3-2P78367 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms