Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA3P55318 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
FOXA3P55318 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA3P55318 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
FOXA3P55318 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
FOXA3P55318 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
FOXA3P55318 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA3P55318 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
FOXA3P55318 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA3P55318 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA3P55318 AL157384.1-201ENST00000445995 2473 ntBASIC16.27■□□□□ 0.2
FOXA3P55318 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.27■□□□□ 0.2
FOXA3P55318 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
FOXA3P55318 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA3P55318 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA3P55318 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA3P55318 HES4-202ENST00000428771 1040 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA3P55318 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA3P55318 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA3P55318 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
FOXA3P55318 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA3P55318 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
FOXA3P55318 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.19
FOXA3P55318 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA3P55318 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
FOXA3P55318 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXA3P55318 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 AC018755.3-202ENST00000596210 929 ntBASIC16.26■□□□□ 0.19
FOXA3P55318 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXA3P55318 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA3P55318 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.26■□□□□ 0.19
FOXA3P55318 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA3P55318 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA3P55318 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
FOXA3P55318 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA3P55318 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA3P55318 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
FOXA3P55318 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC16.25■□□□□ 0.19
FOXA3P55318 SRP68-213ENST00000629930 165 ntTSL 5 BASIC16.25■□□□□ 0.19
FOXA3P55318 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 AC009831.1-201ENST00000580420 1582 ntBASIC16.25■□□□□ 0.19
FOXA3P55318 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA3P55318 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA3P55318 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 IDNK-203ENST00000405990 629 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
FOXA3P55318 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA3P55318 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
FOXA3P55318 LINC01521-201ENST00000504184 1943 ntBASIC16.23■□□□□ 0.19
FOXA3P55318 AC144652.1-201ENST00000609974 1624 ntBASIC16.23■□□□□ 0.19
FOXA3P55318 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA3P55318 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA3P55318 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA3P55318 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA3P55318 AC133552.2-201ENST00000619106 1032 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms