Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC29.18■■■□□ 2.26
COL18A1P39060 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 AC004812.2-201ENST00000611079 2094 ntBASIC29.18■■■□□ 2.26
COL18A1P39060 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC29.18■■■□□ 2.26
COL18A1P39060 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC29.18■■■□□ 2.26
COL18A1P39060 KLF13-207ENST00000560473 489 ntTSL 3 BASIC29.18■■■□□ 2.26
COL18A1P39060 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC29.18■■■□□ 2.26
COL18A1P39060 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC29.18■■■□□ 2.26
COL18A1P39060 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 USP45-205ENST00000472914 1617 ntTSL 5 BASIC29.18■■■□□ 2.26
COL18A1P39060 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL18A1P39060 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
COL18A1P39060 MFF-207ENST00000409565 1548 ntTSL 2 BASIC29.17■■■□□ 2.26
COL18A1P39060 PXK-203ENST00000383715 1756 ntTSL 5 BASIC29.17■■■□□ 2.26
COL18A1P39060 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC29.17■■■□□ 2.26
COL18A1P39060 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL18A1P39060 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL18A1P39060 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
COL18A1P39060 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
COL18A1P39060 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC29.16■■■□□ 2.26
COL18A1P39060 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC29.16■■■□□ 2.26
COL18A1P39060 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC29.16■■■□□ 2.26
COL18A1P39060 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC29.16■■■□□ 2.26
COL18A1P39060 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC29.16■■■□□ 2.26
COL18A1P39060 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC29.16■■■□□ 2.26
COL18A1P39060 PARP1-210ENST00000629232 477 ntTSL 5 BASIC29.16■■■□□ 2.26
COL18A1P39060 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC29.16■■■□□ 2.26
COL18A1P39060 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
COL18A1P39060 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL18A1P39060 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC29.16■■■□□ 2.26
COL18A1P39060 AC005181.1-201ENST00000604782 1256 ntBASIC29.16■■■□□ 2.26
COL18A1P39060 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC29.15■■■□□ 2.26
COL18A1P39060 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 AC083906.2-201ENST00000511578 360 ntBASIC29.15■■■□□ 2.26
COL18A1P39060 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC29.15■■■□□ 2.26
COL18A1P39060 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL18A1P39060 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC29.15■■■□□ 2.26
COL18A1P39060 AC009237.3-201ENST00000393279 1427 ntBASIC29.15■■■□□ 2.26
COL18A1P39060 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL18A1P39060 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC29.14■■■□□ 2.26
COL18A1P39060 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC29.14■■■□□ 2.26
COL18A1P39060 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
COL18A1P39060 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.25
COL18A1P39060 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
COL18A1P39060 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC29.13■■■□□ 2.25
COL18A1P39060 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
COL18A1P39060 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC29.13■■■□□ 2.25
COL18A1P39060 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
COL18A1P39060 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
COL18A1P39060 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC29.13■■■□□ 2.25
COL18A1P39060 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC29.13■■■□□ 2.25
COL18A1P39060 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC29.13■■■□□ 2.25
COL18A1P39060 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
COL18A1P39060 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL18A1P39060 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
COL18A1P39060 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.12■■■□□ 2.25
COL18A1P39060 AC007322.1-201ENST00000426983 750 ntBASIC29.12■■■□□ 2.25
COL18A1P39060 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC29.11■■■□□ 2.25
COL18A1P39060 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC29.11■■■□□ 2.25
COL18A1P39060 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC29.11■■■□□ 2.25
COL18A1P39060 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC29.11■■■□□ 2.25
COL18A1P39060 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC29.11■■■□□ 2.25
COL18A1P39060 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.11■■■□□ 2.25
COL18A1P39060 AL139125.2-201ENST00000623134 1869 ntBASIC29.11■■■□□ 2.25
COL18A1P39060 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
COL18A1P39060 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC29.11■■■□□ 2.25
COL18A1P39060 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL18A1P39060 AC020928.2-201ENST00000588717 2197 ntBASIC29.1■■■□□ 2.25
COL18A1P39060 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL18A1P39060 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.1■■■□□ 2.25
COL18A1P39060 AC055733.4-201ENST00000638462 1354 ntBASIC29.1■■■□□ 2.25
COL18A1P39060 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL18A1P39060 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.1■■■□□ 2.25
COL18A1P39060 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC29.1■■■□□ 2.25
COL18A1P39060 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC29.1■■■□□ 2.25
COL18A1P39060 BRI3-207ENST00000539286 699 ntTSL 2 BASIC29.09■■■□□ 2.25
COL18A1P39060 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL18A1P39060 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL18A1P39060 DUSP8P5-201ENST00000422884 1815 ntBASIC29.09■■■□□ 2.25
COL18A1P39060 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL18A1P39060 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
COL18A1P39060 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL18A1P39060 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL18A1P39060 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL18A1P39060 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL18A1P39060 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms