Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.63■■□□□ 1.69
SHMT1P34896 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.63■■□□□ 1.69
SHMT1P34896 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SHMT1P34896 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHMT1P34896 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHMT1P34896 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.62■■□□□ 1.69
SHMT1P34896 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHMT1P34896 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHMT1P34896 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SHMT1P34896 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SHMT1P34896 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.61■■□□□ 1.69
SHMT1P34896 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
SHMT1P34896 AC006015.1-201ENST00000429970 570 ntBASIC25.61■■□□□ 1.69
SHMT1P34896 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.61■■□□□ 1.69
SHMT1P34896 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.61■■□□□ 1.69
SHMT1P34896 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SHMT1P34896 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
SHMT1P34896 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
SHMT1P34896 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.61■■□□□ 1.69
SHMT1P34896 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SHMT1P34896 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SHMT1P34896 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.6■■□□□ 1.69
SHMT1P34896 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SHMT1P34896 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
SHMT1P34896 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC25.6■■□□□ 1.69
SHMT1P34896 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC25.6■■□□□ 1.69
SHMT1P34896 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SHMT1P34896 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SHMT1P34896 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.6■■□□□ 1.69
SHMT1P34896 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 STX7-201ENST00000367937 1090 ntTSL 5 BASIC25.59■■□□□ 1.69
SHMT1P34896 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.59■■□□□ 1.69
SHMT1P34896 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC25.59■■□□□ 1.69
SHMT1P34896 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.59■■□□□ 1.69
SHMT1P34896 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC25.59■■□□□ 1.69
SHMT1P34896 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SHMT1P34896 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHMT1P34896 AC005224.4-201ENST00000583262 1652 ntBASIC25.58■■□□□ 1.69
SHMT1P34896 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
SHMT1P34896 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SHMT1P34896 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHMT1P34896 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.68
SHMT1P34896 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHMT1P34896 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.57■■□□□ 1.68
SHMT1P34896 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.57■■□□□ 1.68
SHMT1P34896 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHMT1P34896 AC079089.2-201ENST00000531211 1277 ntBASIC25.57■■□□□ 1.68
SHMT1P34896 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC25.57■■□□□ 1.68
SHMT1P34896 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHMT1P34896 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SHMT1P34896 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHMT1P34896 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.56■■□□□ 1.68
SHMT1P34896 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.56■■□□□ 1.68
SHMT1P34896 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHMT1P34896 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHMT1P34896 DBI-210ENST00000542275 757 ntTSL 5 BASIC25.56■■□□□ 1.68
SHMT1P34896 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.56■■□□□ 1.68
SHMT1P34896 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.56■■□□□ 1.68
SHMT1P34896 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHMT1P34896 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHMT1P34896 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.56■■□□□ 1.68
SHMT1P34896 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
SHMT1P34896 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHMT1P34896 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.55■■□□□ 1.68
SHMT1P34896 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC25.55■■□□□ 1.68
SHMT1P34896 AC079140.4-201ENST00000507448 529 ntBASIC25.55■■□□□ 1.68
SHMT1P34896 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.55■■□□□ 1.68
SHMT1P34896 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.55■■□□□ 1.68
SHMT1P34896 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.55■■□□□ 1.68
SHMT1P34896 AC137761.2-201ENST00000561729 223 ntBASIC25.55■■□□□ 1.68
SHMT1P34896 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC25.55■■□□□ 1.68
SHMT1P34896 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC25.55■■□□□ 1.68
SHMT1P34896 AC145350.3-201ENST00000569033 163 ntBASIC25.55■■□□□ 1.68
SHMT1P34896 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
SHMT1P34896 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.55■■□□□ 1.68
SHMT1P34896 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHMT1P34896 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHMT1P34896 HSCB-202ENST00000398941 955 ntTSL 2 BASIC25.54■■□□□ 1.68
SHMT1P34896 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
SHMT1P34896 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.54■■□□□ 1.68
SHMT1P34896 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.53■■□□□ 1.68
SHMT1P34896 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.53■■□□□ 1.68
SHMT1P34896 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.53■■□□□ 1.68
SHMT1P34896 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.53■■□□□ 1.68
SHMT1P34896 AC009237.3-201ENST00000393279 1427 ntBASIC25.53■■□□□ 1.68
SHMT1P34896 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHMT1P34896 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms