Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXD4P09016 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HOXD4P09016 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXD4P09016 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HOXD4P09016 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXD4P09016 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXD4P09016 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD4P09016 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXD4P09016 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXD4P09016 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HOXD4P09016 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
HOXD4P09016 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXD4P09016 ABCB10P4-201ENST00000566803 2184 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXD4P09016 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXD4P09016 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
HOXD4P09016 CCDC92B-201ENST00000575506 885 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 TERF1P2-201ENST00000583350 1212 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
HOXD4P09016 LINC00565-201ENST00000562710 2331 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXD4P09016 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD4P09016 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.66■□□□□ 0.74
HOXD4P09016 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXD4P09016 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXD4P09016 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HOXD4P09016 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXD4P09016 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.65■□□□□ 0.74
HOXD4P09016 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXD4P09016 AC092437.1-201ENST00000624794 1048 ntBASIC19.65■□□□□ 0.74
HOXD4P09016 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXD4P09016 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HOXD4P09016 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXD4P09016 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD4P09016 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXD4P09016 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
HOXD4P09016 AC079630.1-202ENST00000618127 1840 ntBASIC19.65■□□□□ 0.74
HOXD4P09016 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXD4P09016 C1orf229-201ENST00000623686 2258 ntBASIC19.64■□□□□ 0.74
HOXD4P09016 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
HOXD4P09016 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXD4P09016 KRT18P14-201ENST00000534205 1250 ntBASIC19.64■□□□□ 0.73
HOXD4P09016 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
HOXD4P09016 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD4P09016 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXD4P09016 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXD4P09016 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXD4P09016 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
HOXD4P09016 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.63■□□□□ 0.73
HOXD4P09016 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
HOXD4P09016 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD4P09016 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
HOXD4P09016 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXD4P09016 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HOXD4P09016 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms