Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 AP005435.1-201ENST00000529293 1178 ntBASIC22.13■■□□□ 1.13
HLA-DQB2P05538 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HLA-DQB2P05538 LINC00526-201ENST00000581067 1875 ntBASIC22.13■■□□□ 1.13
HLA-DQB2P05538 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AC099791.1-201ENST00000416440 715 ntBASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AC010141.3-201ENST00000456659 717 ntBASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AF213884.3-201ENST00000563833 479 ntBASIC22.12■■□□□ 1.13
HLA-DQB2P05538 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AL355001.2-201ENST00000620617 1191 ntBASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AC087239.1-201ENST00000622671 572 ntBASIC22.12■■□□□ 1.13
HLA-DQB2P05538 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HLA-DQB2P05538 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
HLA-DQB2P05538 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 MIR939-201ENST00000401314 82 ntBASIC22.1■■□□□ 1.13
HLA-DQB2P05538 AC079089.2-201ENST00000531211 1277 ntBASIC22.1■■□□□ 1.13
HLA-DQB2P05538 AC027682.1-201ENST00000562846 899 ntBASIC22.1■■□□□ 1.13
HLA-DQB2P05538 AC126544.1-201ENST00000580842 1059 ntBASIC22.1■■□□□ 1.13
HLA-DQB2P05538 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.1■■□□□ 1.13
HLA-DQB2P05538 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 AC133561.4-201ENST00000566112 224 ntBASIC22.09■■□□□ 1.13
HLA-DQB2P05538 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.09■■□□□ 1.13
HLA-DQB2P05538 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 AC079834.2-201ENST00000609776 1949 ntBASIC22.08■■□□□ 1.13
HLA-DQB2P05538 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HLA-DQB2P05538 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
HLA-DQB2P05538 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HLA-DQB2P05538 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
HLA-DQB2P05538 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
HLA-DQB2P05538 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 OXCT2P1-201ENST00000447263 1535 ntBASIC22.07■■□□□ 1.12
HLA-DQB2P05538 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 SUDS3P1-201ENST00000505831 966 ntBASIC22.07■■□□□ 1.12
HLA-DQB2P05538 AL136967.2-201ENST00000623968 743 ntBASIC22.07■■□□□ 1.12
HLA-DQB2P05538 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 AC092053.2-201ENST00000640557 1818 ntBASIC22.07■■□□□ 1.12
HLA-DQB2P05538 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HLA-DQB2P05538 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.06■■□□□ 1.12
HLA-DQB2P05538 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
HLA-DQB2P05538 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.06■■□□□ 1.12
HLA-DQB2P05538 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HLA-DQB2P05538 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms