Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL4A1P02462 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
COL4A1P02462 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
COL4A1P02462 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC26.94■■□□□ 1.9
COL4A1P02462 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.94■■□□□ 1.9
COL4A1P02462 AC026185.1-201ENST00000445748 174 ntBASIC26.94■■□□□ 1.9
COL4A1P02462 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC26.94■■□□□ 1.9
COL4A1P02462 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC26.94■■□□□ 1.9
COL4A1P02462 AC011767.1-201ENST00000617410 1153 ntBASIC26.94■■□□□ 1.9
COL4A1P02462 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL4A1P02462 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
COL4A1P02462 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
COL4A1P02462 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC26.94■■□□□ 1.9
COL4A1P02462 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC26.94■■□□□ 1.9
COL4A1P02462 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.94■■□□□ 1.9
COL4A1P02462 GAS2L1P2-201ENST00000436355 1356 ntBASIC26.93■■□□□ 1.9
COL4A1P02462 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC26.93■■□□□ 1.9
COL4A1P02462 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC26.93■■□□□ 1.9
COL4A1P02462 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.93■■□□□ 1.9
COL4A1P02462 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC26.93■■□□□ 1.9
COL4A1P02462 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
COL4A1P02462 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
COL4A1P02462 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL4A1P02462 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL4A1P02462 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL4A1P02462 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
COL4A1P02462 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL4A1P02462 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL4A1P02462 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL4A1P02462 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.92■■□□□ 1.9
COL4A1P02462 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC26.92■■□□□ 1.9
COL4A1P02462 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC26.92■■□□□ 1.9
COL4A1P02462 AC104187.1-201ENST00000607510 612 ntBASIC26.92■■□□□ 1.9
COL4A1P02462 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL4A1P02462 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC26.92■■□□□ 1.9
COL4A1P02462 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL4A1P02462 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL4A1P02462 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
COL4A1P02462 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.92■■□□□ 1.9
COL4A1P02462 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.92■■□□□ 1.9
COL4A1P02462 AC079140.4-201ENST00000507448 529 ntBASIC26.92■■□□□ 1.9
COL4A1P02462 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC26.92■■□□□ 1.9
COL4A1P02462 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.91■■□□□ 1.9
COL4A1P02462 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL4A1P02462 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
COL4A1P02462 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL4A1P02462 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL4A1P02462 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
COL4A1P02462 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC26.9■■□□□ 1.9
COL4A1P02462 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.9■■□□□ 1.9
COL4A1P02462 UBE2DNL-204ENST00000602536 740 ntBASIC26.9■■□□□ 1.9
COL4A1P02462 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL4A1P02462 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL4A1P02462 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL4A1P02462 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.89■■□□□ 1.9
COL4A1P02462 KRT19P1-201ENST00000405746 1186 ntBASIC26.89■■□□□ 1.9
COL4A1P02462 SPI1-203ENST00000533030 661 ntTSL 2 BASIC26.89■■□□□ 1.9
COL4A1P02462 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC26.89■■□□□ 1.9
COL4A1P02462 GAMT-205ENST00000640762 751 ntTSL 5 BASIC26.89■■□□□ 1.9
COL4A1P02462 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
COL4A1P02462 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.89■■□□□ 1.89
COL4A1P02462 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC26.89■■□□□ 1.89
COL4A1P02462 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC26.89■■□□□ 1.89
COL4A1P02462 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
COL4A1P02462 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC26.89■■□□□ 1.89
COL4A1P02462 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC26.89■■□□□ 1.89
COL4A1P02462 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.88■■□□□ 1.89
COL4A1P02462 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 KRT87P-202ENST00000534226 1464 ntBASIC26.88■■□□□ 1.89
COL4A1P02462 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL4A1P02462 ESRRAP2-201ENST00000418437 1549 ntBASIC26.88■■□□□ 1.89
COL4A1P02462 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.87■■□□□ 1.89
COL4A1P02462 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.87■■□□□ 1.89
COL4A1P02462 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
COL4A1P02462 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL4A1P02462 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL4A1P02462 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL4A1P02462 GUSBP6-202ENST00000438529 1198 ntBASIC26.86■■□□□ 1.89
COL4A1P02462 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL4A1P02462 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC26.86■■□□□ 1.89
COL4A1P02462 LINC01960-201ENST00000563759 1884 ntBASIC26.86■■□□□ 1.89
COL4A1P02462 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
COL4A1P02462 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.85■■□□□ 1.89
COL4A1P02462 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC26.85■■□□□ 1.89
COL4A1P02462 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
COL4A1P02462 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL4A1P02462 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL4A1P02462 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL4A1P02462 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
COL4A1P02462 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.85■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms