Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.15■■■□□ 2.1
PTCD1O75127 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PTCD1O75127 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
PTCD1O75127 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PTCD1O75127 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
PTCD1O75127 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28.14■■■□□ 2.1
PTCD1O75127 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.14■■■□□ 2.1
PTCD1O75127 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.1
PTCD1O75127 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PTCD1O75127 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
PTCD1O75127 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.14■■■□□ 2.1
PTCD1O75127 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.14■■■□□ 2.1
PTCD1O75127 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
PTCD1O75127 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.09
PTCD1O75127 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
PTCD1O75127 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
PTCD1O75127 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
PTCD1O75127 KRT18P11-201ENST00000435214 1283 ntBASIC28.13■■■□□ 2.09
PTCD1O75127 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC28.13■■■□□ 2.09
PTCD1O75127 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PTCD1O75127 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PTCD1O75127 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
PTCD1O75127 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC28.12■■■□□ 2.09
PTCD1O75127 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC28.12■■■□□ 2.09
PTCD1O75127 AC104187.1-201ENST00000607510 612 ntBASIC28.12■■■□□ 2.09
PTCD1O75127 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC28.12■■■□□ 2.09
PTCD1O75127 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PTCD1O75127 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PTCD1O75127 AC005224.4-201ENST00000583262 1652 ntBASIC28.11■■■□□ 2.09
PTCD1O75127 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
PTCD1O75127 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC28.11■■■□□ 2.09
PTCD1O75127 MFSD11-216ENST00000590393 1141 ntBASIC28.11■■■□□ 2.09
PTCD1O75127 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PTCD1O75127 PXK-203ENST00000383715 1756 ntTSL 5 BASIC28.11■■■□□ 2.09
PTCD1O75127 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
PTCD1O75127 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC28.1■■■□□ 2.09
PTCD1O75127 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTCD1O75127 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC28.09■■■□□ 2.09
PTCD1O75127 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.09■■■□□ 2.09
PTCD1O75127 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.09■■■□□ 2.09
PTCD1O75127 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC28.09■■■□□ 2.09
PTCD1O75127 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
PTCD1O75127 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PTCD1O75127 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PTCD1O75127 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.08■■■□□ 2.09
PTCD1O75127 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.08■■■□□ 2.09
PTCD1O75127 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.08■■■□□ 2.09
PTCD1O75127 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PTCD1O75127 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PTCD1O75127 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC28.08■■■□□ 2.09
PTCD1O75127 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
PTCD1O75127 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
PTCD1O75127 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PTCD1O75127 MDK-213ENST00000617138 635 ntTSL 2 BASIC28.07■■■□□ 2.08
PTCD1O75127 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PTCD1O75127 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
PTCD1O75127 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.06■■■□□ 2.08
PTCD1O75127 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
PTCD1O75127 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
PTCD1O75127 ABHD17AP1-201ENST00000358206 933 ntBASIC28.06■■■□□ 2.08
PTCD1O75127 GPX1P1-201ENST00000388829 606 ntBASIC28.06■■■□□ 2.08
PTCD1O75127 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
PTCD1O75127 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC28.06■■■□□ 2.08
PTCD1O75127 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PTCD1O75127 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC28.06■■■□□ 2.08
PTCD1O75127 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.06■■■□□ 2.08
PTCD1O75127 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PTCD1O75127 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC28.06■■■□□ 2.08
PTCD1O75127 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
PTCD1O75127 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
PTCD1O75127 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC28.05■■■□□ 2.08
PTCD1O75127 KRT87P-202ENST00000534226 1464 ntBASIC28.05■■■□□ 2.08
PTCD1O75127 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC28.05■■■□□ 2.08
PTCD1O75127 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC28.05■■■□□ 2.08
PTCD1O75127 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC28.05■■■□□ 2.08
PTCD1O75127 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTCD1O75127 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
PTCD1O75127 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC28.04■■■□□ 2.08
PTCD1O75127 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PTCD1O75127 MAZ-216ENST00000616501 991 ntTSL 5 BASIC28.04■■■□□ 2.08
PTCD1O75127 AL050303.2-201ENST00000619798 666 ntBASIC28.04■■■□□ 2.08
PTCD1O75127 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC28.04■■■□□ 2.08
PTCD1O75127 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
PTCD1O75127 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms