Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
XRCC3O43542 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.62■□□□□ 0.57
XRCC3O43542 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.62■□□□□ 0.57
XRCC3O43542 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC3O43542 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
XRCC3O43542 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 FEM1AP4-201ENST00000443167 1987 ntBASIC18.61■□□□□ 0.57
XRCC3O43542 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC3O43542 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
XRCC3O43542 AC139795.1-202ENST00000500444 432 ntBASIC18.61■□□□□ 0.57
XRCC3O43542 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
XRCC3O43542 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC3O43542 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
XRCC3O43542 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC3O43542 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.6■□□□□ 0.57
XRCC3O43542 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC3O43542 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.59■□□□□ 0.57
XRCC3O43542 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.59■□□□□ 0.57
XRCC3O43542 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.59■□□□□ 0.57
XRCC3O43542 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
XRCC3O43542 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC3O43542 LINC01521-201ENST00000504184 1943 ntBASIC18.59■□□□□ 0.57
XRCC3O43542 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC3O43542 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC3O43542 AL121603.2-201ENST00000557373 2117 ntBASIC18.58■□□□□ 0.57
XRCC3O43542 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.58■□□□□ 0.57
XRCC3O43542 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.58■□□□□ 0.56
XRCC3O43542 U85056.1-201ENST00000616429 682 ntBASIC18.58■□□□□ 0.56
XRCC3O43542 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC3O43542 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
XRCC3O43542 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
XRCC3O43542 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC3O43542 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
XRCC3O43542 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
XRCC3O43542 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 AF106564.1-201ENST00000607058 2553 ntBASIC18.57■□□□□ 0.56
XRCC3O43542 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.57■□□□□ 0.56
XRCC3O43542 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC3O43542 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
XRCC3O43542 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms