Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM38O00635 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TRIM38O00635 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
TRIM38O00635 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 MIR572-201ENST00000384983 95 ntBASIC21.82■■□□□ 1.08
TRIM38O00635 AC027612.3-201ENST00000413684 1047 ntBASIC21.82■■□□□ 1.08
TRIM38O00635 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.82■■□□□ 1.08
TRIM38O00635 AC010525.1-201ENST00000585559 441 ntBASIC21.82■■□□□ 1.08
TRIM38O00635 RARRES2P11-201ENST00000635158 484 ntBASIC21.82■■□□□ 1.08
TRIM38O00635 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM38O00635 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM38O00635 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM38O00635 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM38O00635 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TRIM38O00635 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
TRIM38O00635 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.81■■□□□ 1.08
TRIM38O00635 AC090192.1-201ENST00000517740 490 ntBASIC21.81■■□□□ 1.08
TRIM38O00635 AL499627.2-201ENST00000606283 725 ntBASIC21.81■■□□□ 1.08
TRIM38O00635 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.81■■□□□ 1.08
TRIM38O00635 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TRIM38O00635 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM38O00635 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM38O00635 ECEL1P1-201ENST00000373592 1742 ntBASIC21.8■■□□□ 1.08
TRIM38O00635 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRIM38O00635 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRIM38O00635 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
TRIM38O00635 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRIM38O00635 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.8■■□□□ 1.08
TRIM38O00635 AC123595.1-201ENST00000440769 1046 ntBASIC21.8■■□□□ 1.08
TRIM38O00635 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM38O00635 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
TRIM38O00635 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 AC137767.1-201ENST00000602918 1920 ntBASIC21.8■■□□□ 1.08
TRIM38O00635 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM38O00635 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.79■■□□□ 1.08
TRIM38O00635 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM38O00635 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.79■■□□□ 1.08
TRIM38O00635 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
TRIM38O00635 AC012414.1-201ENST00000556676 535 ntBASIC21.79■■□□□ 1.08
TRIM38O00635 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.79■■□□□ 1.08
TRIM38O00635 AC092437.1-201ENST00000624794 1048 ntBASIC21.79■■□□□ 1.08
TRIM38O00635 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.79■■□□□ 1.08
TRIM38O00635 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.79■■□□□ 1.08
TRIM38O00635 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
TRIM38O00635 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM38O00635 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM38O00635 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.79■■□□□ 1.08
TRIM38O00635 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM38O00635 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM38O00635 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM38O00635 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM38O00635 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRIM38O00635 AL137784.2-201ENST00000607332 1000 ntBASIC21.78■■□□□ 1.08
TRIM38O00635 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM38O00635 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM38O00635 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM38O00635 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM38O00635 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM38O00635 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM38O00635 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM38O00635 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.77■■□□□ 1.08
TRIM38O00635 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM38O00635 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM38O00635 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.77■■□□□ 1.08
TRIM38O00635 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM38O00635 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.77■■□□□ 1.08
TRIM38O00635 AL354811.1-201ENST00000610286 706 ntBASIC21.77■■□□□ 1.08
TRIM38O00635 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
TRIM38O00635 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms